Description Usage Arguments Value Examples
Given an object returned from the sharpr2 function, this function calls significant regions that contain driver elements for a specific tiled region based on a user-defined threshold.
1 | call_sig_reg(res, nr, threshold = 3.5, win = 10)
|
res |
An object obtained from the sharpr2 function. |
nr |
An integer indicating the number of tiled region in res for which driver elements will be called. |
threshold |
The cutoff to identify driver elements in the tiled region. The positions with a z-score larger than the threshold will be called. The default is 3.5. |
win |
A window size for removing sporadic significant regions. If a significant consecutive region is small than win, it will be treated as false signals. The default is 10. |
sig_reg: identified regions containing driver elements.
motif: predicted 20bp core driver elements
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