call_tile_reg: call_tile_reg
In sharpr2: Estimating Regulatory Scores and Identifying ATAC-STARR Data
Description
Usage
Arguments
Value
Examples
View source: R/call_tile_reg.r
Description
For a HiDRA dataset on a given chromosome, this function calls tile regions (the regions covered by at least one read).
Usage
1
Arguments
data
A data.frame for a HiDRA dataset for one chromosome. The data.frame must contain four columns: 'start', 'end', 'PLASMID', 'RNA', and is sorted by 'start'.
Value
tile_reg: A list containing the row ids in the data for each tiled region.
size: The number of reads in each tiled region.
num_r: The total number of tiled regions.
Examples
1
2
data(hidra_ex)
tiled <- call_tile_reg(hidra_ex)
sharpr2 documentation built on May 2, 2019, 2:45 p.m.
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Description Usage Arguments Value Examples
View source: R/call_tile_reg.r
Description
For a HiDRA dataset on a given chromosome, this function calls tile regions (the regions covered by at least one read).
Usage
1 |
Arguments
data |
A data.frame for a HiDRA dataset for one chromosome. The data.frame must contain four columns: 'start', 'end', 'PLASMID', 'RNA', and is sorted by 'start'. |
Value
tile_reg: A list containing the row ids in the data for each tiled region.
size: The number of reads in each tiled region.
num_r: The total number of tiled regions.
Examples
1 2 | data(hidra_ex)
tiled <- call_tile_reg(hidra_ex)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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