fit_plot: Create fit plot

In shinyMixR: Interactive 'shiny' Dashboard for 'nlmixr2'

Create fit plot

Description

Creates a fit plot either using the xpose.nlmixr package or using a default ggplot call

Usage

fit_plot(
  dfrm,
  type = "xpose",
  by = "ID",
  idv = "TIME",
  obs = "DV",
  pred = "PRED",
  ipred = "IPRED",
  grp = "ID",
  logy = TRUE,
  scales = "fixed",
  mdlnm = NULL,
  outnm = NULL,
  projloc = ".",
  ...
)

Arguments

dfrm	data frame as created by the nlmixr function
type	character defining the type of plot that should be created. currently "xpose" and "user" are supported for xpose or ggplot style of plots
by	character vector with variables for facetting
idv	independent variable or x variable
obs	variable with observed data points
pred	variable with predicted data points
ipred	variable with individual predicted data points
grp	variable for grouping (mainly to draw separate lines)
logy	logical if y-axis should be displayed on log scale
scales	character of length one defining the scale parameter of ggplot (e.g. "fixed", "free","free_y",etc)
mdlnm	character with name of the model
outnm	character with name of the output file (see details)
projloc	character with the base location of the shinyMixR project
...	additional arguments passed to ltx_plot or html_plot

Details

In case a model is saved, a directory with the name of the model is created within the analysis folder of the current project. Then within this folder the file is saved as outnm. This method was chosen so the interface can easily index applicable files for a certain model. However, this means that output is always saved in this directly regardless of the location of outnm

Value

in case no outnm is defined a ggplot object will be returned otherwise the results are saved to disk

Author(s)

Richard Hooijmaijers

Examples

## Not run: 
 fit_plot(res)

## End(Not run)

shinyMixR documentation built on April 12, 2025, 2:25 a.m.