run_nmx: Runs a nlmixr model

In shinyMixR: Interactive 'shiny' Dashboard for 'nlmixr2'

Runs a nlmixr model

Description

Runs an nlmixr model from a project object with the possibility to run in an external rsession using a system call (tested within linux only)

Usage

run_nmx(
  mod,
  proj = proj,
  ext = TRUE,
  saverds = TRUE,
  autoupdate = TRUE,
  projloc = ".",
  addcwres = TRUE,
  addnpde = TRUE
)

Arguments

mod	character with the model file present in project object
proj	project object
ext	logical indicating if the model should be run external in a separate r session
saverds	logical indicating if the model results should be saved in a rds file
autoupdate	logical indicating if the project object should automatically update
projloc	character with the base location of the shinyMixR project
addcwres	logical indicating if CWRES should be added to the output
addnpde	logical indicating if NPDE should be added to the output

Details

the meta data is obtained by compiling the model. The dataset, estimation method and control list are then included in the nlmixr call. Meta data is included in the model function which is comparable with NONMEM. This method was chosen so that all information to run a model is kept together in one function

Value

In case the model is not submitted in a separate R session, the results from nlmixr are returned otherwise the result of the system call will be returned

Author(s)

Richard Hooijmaijers

Examples

## Not run: 
 run_nmx("run1",proj)

## End(Not run)

shinyMixR documentation built on April 12, 2025, 2:25 a.m.