gof_plot: Create goodness of fit plots

In shinyMixR: Interactive 'shiny' Dashboard for 'nlmixr2'

Create goodness of fit plots

Description

Creates goodness of fit plots either using the xpose.nlmixr package or using a default ggplot call

Usage

gof_plot(
  dfrm,
  type = "xpose",
  mdlnm = NULL,
  colby = NULL,
  ptype = "all",
  outnm = NULL,
  projloc = ".",
  title = NULL,
  linscale = FALSE,
  ...
)

Arguments

dfrm	data frame as created by the nlmixr function
type	character defining the type of plot that should be created. currently "xpose" and "user" are supported for xpose or ggplot style of plots
mdlnm	character with name of the model
colby	character vector of length one specifying the variable to color on (for now can be only one variable)
ptype	The type of plots to create. Currently the following is accepted: "all", "ipred.dv", "pred.dv", "idv.res", "pred.res"
outnm	character with name of the output file (see details)
projloc	character with the base location of the shinyMixR project
title	character with the title to place above the plot
linscale	Logical indicating if the scales should be set to linear for DV, PRED and IPRED plots
...	additional arguments passed to ltx_plot or html_plot

Details

In case a model is saved, a directory with the name of the model is created within the analysis folder of the current project. Then within this folder the file is saved as outnm. This method was chosen so the interface can easily index applicable files for a certain model. However, this means that output is always saved in this directly regardless of the location of outnm

Value

in case no outnm is defined a ggplot object will be returned otherwise the results are saved to disk

Author(s)

Richard Hooijmaijers

Examples

## Not run: 
 gof_plot(res)

## End(Not run)

shinyMixR documentation built on April 12, 2025, 2:25 a.m.