signalHsmm: Predict Presence of Signal Peptides

Predicts the presence of signal peptides in eukaryotic protein using hidden semi-Markov models. The implemented algorithm can be accessed from both the command line and GUI.

AuthorMichal Burdukiewicz [cre, aut], Piotr Sobczyk [aut]
Date of publication2016-03-03 14:16:37
MaintainerMichal Burdukiewicz <michalburdukiewicz@gmail.com>
LicenseGPL-3
Version1.4
https://github.com/michbur/signalhsmm

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Files in this package

signalHsmm
signalHsmm/inst
signalHsmm/inst/CITATION
signalHsmm/inst/signal_gui
signalHsmm/inst/signal_gui/ui.R
signalHsmm/inst/signal_gui/server.R
signalHsmm/inst/signal_gui/readme.md
signalHsmm/inst/signal_gui/logo.png
signalHsmm/inst/signal_gui/prots.txt
signalHsmm/inst/signal_gui/signalhsmm_report.Rmd
signalHsmm/src
signalHsmm/src/duration_viterbi.cpp
signalHsmm/src/RcppExports.cpp
signalHsmm/NAMESPACE
signalHsmm/CHANGELOG
signalHsmm/data
signalHsmm/data/benchmark_dat.rda
signalHsmm/data/aaaggregation.rda
signalHsmm/R
signalHsmm/R/add_k_mer_state.R signalHsmm/R/utils.R signalHsmm/R/hsmm_pred.R signalHsmm/R/read_txt.R signalHsmm/R/run_signalHsmm.R signalHsmm/R/read_uniprot.R signalHsmm/R/signalHsmm.R signalHsmm/R/RcppExports.R signalHsmm/R/predict.sighsmm_model.R signalHsmm/R/find_nhc.R signalHsmm/R/train_hsmm.R signalHsmm/R/is_protein.R signalHsmm/R/datasets.R signalHsmm/R/hsmm_pred_list.R signalHsmm/R/sighsmm_model.R
signalHsmm/README.md
signalHsmm/MD5
signalHsmm/DESCRIPTION
signalHsmm/man
signalHsmm/man/duration_viterbi.Rd signalHsmm/man/benchmark_dat.Rd signalHsmm/man/gui_signalHsmm.Rd signalHsmm/man/predict.sighsmm_model.Rd signalHsmm/man/hsmm_pred_list.Rd signalHsmm/man/run_signalHsmm.Rd signalHsmm/man/hsmm_pred.Rd signalHsmm/man/signalHsmm.Rd signalHsmm/man/train_hsmm.Rd signalHsmm/man/is_protein.Rd signalHsmm/man/add_k_mer_state.Rd signalHsmm/man/summary.hsmm_pred.Rd signalHsmm/man/read_uniprot.Rd signalHsmm/man/summary.hsmm_pred_list.Rd signalHsmm/man/pred2df.Rd signalHsmm/man/find_nhc.Rd signalHsmm/man/read_txt.Rd signalHsmm/man/aaaggregation.Rd signalHsmm/man/plot.hsmm_pred.Rd

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