Man pages for signalHsmm
Predict Presence of Signal Peptides
| aaaggregation | Reduced amino acid alphabet |
| add_k_mer_state | Adds k-mer hidden state to signalHsmm model |
| benchmark_dat | Benchmark data set for signalHsmm |
| duration_viterbi | Compute most probable path with extended Viterbi algorithm. |
| find_nhc | Localize n-, h- and c-region in signal peptide |
| gui_signalHsmm | GUI for signalHsmm |
| hsmm_pred | hsmm_pred class |
| hsmm_pred_list | hsmm_pred_list class |
| is_protein | Protein test |
| plot.hsmm_pred | Plot single signalHsmm prediction |
| pred2df | Convert list of signalHsmm predictions |
| predict.sighsmm_model | Predict sighsmm_model object |
| read_txt | Read sequences from .txt file |
| read_uniprot | Read data from UniProt database |
| run_signalHsmm | Predict presence of signal peptide in protein |
| signalHsmm | signalHsmm - prediction of signal peptides |
| summary.hsmm_pred | Summarize single signalHsmm prediction |
| summary.hsmm_pred_list | Summarize list of signalHsmm predictions |
| train_hsmm | Train sighsmm_model object |
