plotsimexaft: Plot the Extrapolation Curve

In simexaft: simexaft

Description

A function to give the plot of the extrapolation curve for any covariables of the AFT model.

Usage

plotsimexaft(obj, var, extrapolation=c("linear","quadratic","both"), ylimit)

Arguments

obj	an object returned by the function "simexaft".
var	a character string of any covariate used in the AFT model.
extrapolation	a character string giving the type of the extrapolation method, the default is set to be linear extrapolation.
ylimit	the y limits of the plot.

Details

The green points are the average of estimates of B iteration for each labmda.

The linear extrapolation curve is in blue, the corresponding SIMEX estimate is the solid red circle.

The quadratic extrapolation curve is in red, the corresponding SIMEX estimate is the solid blue circle.

The "both" option of the extrapolation method gives both linear and quadratic extrapolation curves.

Author(s)

Juan Xiong, Wenqing He and Grace Y. Yi

See Also

survreg

Examples

###########example for the dataset with known variance.################
library("simexaft")
library("survival")
data("BHS")
dataset <- BHS
dataset$SBP <- log(dataset$SBP-50)

set.seed(120)
formula <- Surv(SURVTIME,DTHCENS)~SBP+CHOL+AGE+BMI+SMOKE1+SMOKE2

ind <- c("SBP", "CHOL")
err.mat <- diag(rep(0.5625, 2))

### fit an AFT model with quadratic extrapolation
out2 <- simexaft(formula = formula, data = dataset, SIMEXvariable = ind, 
        repeated = FALSE, repind = list(), err.mat = err.mat, B = 50, 
        lambda=seq(0, 2, 0.1),extrapolation="quadratic", dist="weibull")

summary(out2)

plotsimexaft(out2,"SBP","both",ylimit=c(-3,1))

simexaft documentation built on May 2, 2019, 11:05 a.m.