demo/simule.R

library(simule)


### plotting window reset routine
graphics.off()
par(ask=F)
par(mfrow=c(1,1))


readline(prompt="Press [enter] to continue to cancer demo with 2 tasks (not v. pcr) and 26 features (26 cancer types) ")

### load cancer data (cancer)
data(cancer)

### create a list of cancer data (cancerlist)
cancerlist = list(as.matrix(cancer[[1]][which(cancer[[2]] == "not"),]),
                  as.matrix(cancer[[1]][which(cancer[[2]] == "pcr"),]))

result = simule(cancerlist, 0.2, 1, covType = "cov", TRUE)
label = colnames(cancer[[1]])
graph = returngraph(result)


layout = layout_nicely(graph,dim=2)



### multiple plotting
readline(prompt="Press [enter] to display four plots showing all graphs, shared graph, task specific 1 and task specific 2")

par(mfrow=c(2,2))

{
  plot.simule(result, graphlabel = label, type="task", graphlayout = layout)

  plot.simule(result, graphlabel = label, type="share", graphlayout = layout)

  plot.simule(result, graphlabel = label, type="taskspecific", subID=1, graphlayout = layout)

  plot.simule(result, graphlabel = label, type="taskspecific", subID=2, graphlayout = layout)
}


readline(prompt="Press [enter] to continue to synthetic Gaussian data demo with 2 tasks and 20 features")


### load the example data
data(exampleData)

result = simule(X = exampleData , lambda = 0.1, epsilon = 0.45, covType = "cov", TRUE)
graph = returngraph(result)


layout = layout_nicely(graph,dim=2)
label = NULL

### multiple display
readline(prompt="Press [enter] to view the four plots showing all graphs, shared graph, task 1 and task 2 specific graphs")
par(mfrow=c(2,2))

{
  plot.simule(result,  graphlabel = label, type="task", graphlayout = layout)

  plot.simule(result,  graphlabel = label, type="share", graphlayout = layout)

  plot.simule(result,  graphlabel = label, type="taskspecific", subID=1, graphlayout = layout)

  plot.simule(result, graphlabel = label, type="taskspecific", subID=2, graphlayout = layout)
}


readline(prompt="Press [enter] to continue to NIPS word count demo with 2 tasks (before 2006 and after 2006) and 37 features (37 words)")

### load the nips word count data
data(nip_37_data)
label = colnames(nip_37_data[[1]])
result = simule(nip_37_data, lambda = 0.13, epsilon = 0.5, covType = "kendall", parallel = TRUE)
graph = returngraph(result)


layout = layout_nicely(graph, dim = 2)

### multiple plotting
readline(prompt="Press [enter] to display four plots showing all graphs, shared graph, task specific 1 and task specific 2")

par(mfrow=c(2,2))

{
  plot.simule(result,  graphlabel = label, type="task", graphlayout = layout)

  plot.simule(result,  graphlabel = label, type="share", graphlayout = layout)

  plot.simule(result,  graphlabel = label, type="taskspecific", subID=1, graphlayout = layout)

  plot.simule(result,  graphlabel = label, type="taskspecific", subID=2, graphlayout = layout)
}

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simule documentation built on May 1, 2019, 6:47 p.m.