Run Global, Locus, and Pairwise analyses on results from a single simulation replicate stored in params@rep.sample#'
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | analysisFunc(params)
loadResultsMatrix(params, mat, label)
formatOverallStats(g, num.perm.reps)
globalAnalysis(g, num.perm.reps)
locusAnalysisGenotypes(g)
hapSmryFunc(g)
locusAnalysisHaplotypes(g)
calcChordDist(dat)
pairwiseAnalysis(g, num.perm.reps)
|
params |
a skeleSim.params object. |
mat |
results matrix to be loaded into params object. |
label |
analysis type label ("Global", "Locus", or "Pairwise"). |
g |
a gtypes object. |
num.perm.reps |
number of permutation replicates. |
dat |
data.frame in hierfstat format (see |
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