smfishHmrf: Hidden Markov Random Field for Spatial Transcriptomic Data

Discovery of spatial patterns with Hidden Markov Random Field. This package is designed for spatial transcriptomic data and single molecule fluorescent in situ hybridization (FISH) data such as sequential fluorescence in situ hybridization (seqFISH) and multiplexed error-robust fluorescence in situ hybridization (MERFISH). The methods implemented in this package are described in Zhu et al. (2018) <doi:10.1038/nbt.4260>.

Getting started

Package details

AuthorQian Zhu and Guo-Cheng Yuan
MaintainerQian Zhu <>
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:

Try the smfishHmrf package in your browser

Any scripts or data that you put into this service are public.

smfishHmrf documentation built on Jan. 13, 2021, 12:54 p.m.