Man pages for smfishHmrf
Hidden Markov Random Field for Spatial Transcriptomic Data
| checkErrors | checkErrors |
| checkErrorsMulti | checkErrorsMulti |
| checkStopVerbose | checkStopVerbose |
| checkStopVerboseMulti | checkStopVerboseMulti |
| findDampFactor | findDampFactor |
| getDen | getDen |
| initialIndices | initialIndices |
| initialIndicesMulti | initialIndicesMulti |
| relerr | relerr |
| relerr.multi | relerr.multi |
| seqfishplus | SeqFISHplus dataset |
| smfishHmrf | smfishHmrf: A package for running hidden markov random field... |
| smfishHmrf.generate.centroid | Generate cluster centroids, where input is given as a matrix. |
| smfishHmrf.generate.centroid.it | Generate cluster centroids, where input is a file. |
| smfishHmrf.generate.centroid.save | Save the cluster centroids to file |
| smfishHmrf.generate.centroid.use.exist | Use existing cluster centroids |
| smfishHmrf.hmrfem | smfishHmrf.hmrfem |
| smfishHmrf.hmrfem.multi | Performs HMRF for multivariate normal distribution. Accepts R... |
| smfishHmrf.hmrfem.multi.it | Perform HMRF for multivariate normal distribution. Accepts R... |
| smfishHmrf.hmrfem.multi.it.min | Perform HMRF on multivariate normal distributions. Accepts... |
| smfishHmrf.hmrfem.multi.save | Save the HMRF result |
| smfishHmrf.read.expression | smfishHmrf.read.expression |
