Description Slots Methods Note Author(s) See Also
This class is defined to summarize the enrichment analysis.
It's a part of Chromosome
and Enrichment
classes.
[vector(character)]: a list of SNPs used to compute enrichment (e.g. eSNP or xSNP).
[matrix]: Contingency table with SNPs (columns) and P-Values from signal (rows).
[numeric]: Enrichment Ratio is computed on the contingency table (Table
slot).
[numeric]: A statistic computed from EnrichmentRatio
and resampling results.
[numeric]: P-Value associated with the statistic Z
.
[matrix]: A matrix with by row, the contingency table and the odds ratio for each resampling.
Get the value of the field slotName
.
Set value
to the field slotName
.
Return the formatted values of EnrichSNP
object.
EnrichSNP
object is not intended to be use directly by user.
It is a part of the Enrichment
and Chromosome
object.
Mickael Canouil mickael.canouil@good.ibl.fr
Overview : snpEnrichment-package
Classes : Enrichment
, Chromosome
, EnrichSNP
Methods : plot
, reSample
, getEnrichSNP
, excludeSNP
, compareEnrichment
,
enrichment
, is.enrichment
, chromosome
, is.chromosome
Functions : initFiles
, writeLD
, readEnrichment
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