getEnrichSNP-methods: Get all eSNP/xSNP which are enriched

In snpEnrichment: SNPs Enrichment Analysis

Description

getEnrichSNP get all eSNP/xSNP in a Enrichment object which are significant in the signal according to sigThresh defined in readEnrichment.

Usage

## S4 method for signature 'Enrichment'
getEnrichSNP(object, type = "eSNP")

Arguments

object	[Enrichment]: an object of class Enrichment.
type	[character]: extract eSNP or xSNP data.

Value

Return a data.frame with eSNP/xSNP which are enriched in signal given to signalFile in function readEnrichment.

Author(s)

Mickael Canouil [e-mail]

See Also

Overview : snpEnrichment-package
Classes : Enrichment, Chromosome, EnrichSNP
Methods : plot, reSample, getEnrichSNP, excludeSNP, compareEnrichment,
enrichment, is.enrichment, chromosome, is.chromosome
Functions : initFiles, writeLD, readEnrichment

Examples

## Not run: data(toyEnrichment)
eSNPenriched <- getEnrichSNP(object = toyEnrichment, type = "eSNP")
head(eSNPenriched)
## End(Not run)

snpEnrichment documentation built on May 2, 2019, 8:44 a.m.