write.snphap: Write SNPHAP files

In snpStatsWriter: Flexible writing of snpStats objects to flat files

Description

Simple wrapper to write.simple to write files in SNPHAP format

Usage

  write.snphap(X, a1 = NULL, a2 = NULL, file)

Arguments

X	SnpMatrix object
a1	vector of first allele at each SNP
a2	vector of second allele at each SNP
file	Output file name.

Details

If not allele codes are given, a1 and a2 will be set to 1 and 2 for all SNPs

Value

No return value, but has the side effect of writing specified output file.

Author(s)

Chris Wallace

Examples

data(testdata,package="snpStats")
A.small <- Autosomes[1:6,1:10]
f <- tempfile()
## write in suitable format for snphap
write.snphap(A.small, file=f)
unlink(f)

snpStatsWriter documentation built on May 2, 2019, 5:41 a.m.