write.sbams: write.sbams

In snpStatsWriter: Flexible writing of snpStats objects to flat files

Description

write an sbams format file

Usage

  write.sbams(X, response, file)

Arguments

response	vector or matrix of response variables. rows index subjects, columns index variables
X	SnpMatrix object
file	Output file name.

Details

sbams is software from Xiaoquan Wen at https://github.com/xqwen/sbams

Value

No return value, but has the side effect of writing specified output file.

Author(s)

Chris Wallace

Examples

data(testdata,package="snpStats")
A.small <- Autosomes[1:6,1:10]
R <- matrix(rnorm(12),ncol=2)
colnames(R) <- c("var1","var2")
f <- tempfile()

## write in suitable format for sbams
write.sbams(X=A.small, response=R, file=f)
unlink(f)

Example output

Loading required package: snpStats
Loading required package: survival
Loading required package: Matrix
Loading required package: colorspace

snpStatsWriter documentation built on May 2, 2019, 5:41 a.m.