API for socialmixr
Social Mixing Matrices for Infectious Disease Modelling
| Global functions | |
|---|---|
| .get_survey | Man page Source code |
| .list_surveys | Source code |
| [.contact_survey | Man page |
| `[.contact_survey` | Source code |
| add_age | Man page Source code |
| add_contact_age | Source code |
| add_contact_age_groups | Source code |
| add_part_age | Source code |
| add_survey_upper_age_limit | Source code |
| add_upper_age_limits | Source code |
| adjust_ppt_age_group_breaks | Source code |
| adjust_survey_age_groups | Source code |
| age_group_labels | Source code |
| agegroups_to_limits | Man page Source code |
| apply_data_filter | Source code |
| as.matrix.contact_matrix | Source code |
| as_contact_survey | Man page Source code |
| assemble_survey | Man page Source code |
| assign_age_groups | Man page Source code |
| build_na_warning | Source code |
| calculate_weighted_matrix | Source code |
| check | Man page Source code |
| check.contact_survey | Man page Source code |
| check_age_column | Source code |
| check_age_limits_increasing | Source code |
| check_any_missing_countries | Source code |
| check_arg_dots_in | Source code |
| check_files_exist | Source code |
| check_if_contact_survey | Source code |
| check_missing_countries | Source code |
| check_na_in_weighted_matrix | Source code |
| clean | Man page Source code |
| clean.contact_survey | Man page Source code |
| compute_matrix | Man page Source code |
| contact_age_distribution | Man page Source code |
| contact_matrix | Man page Source code |
| convert_factor_to_integer | Source code |
| copy_survey | Man page Source code |
| create_age_breaks | Source code |
| create_bootstrap_weights | Source code |
| deprecate_arg | Man page Source code |
| download_survey | Man page Source code |
| drop_ages_below_age_limit | Source code |
| drop_invalid_ages | Source code |
| drop_invalid_contact_ages | Source code |
| drop_missing_contact_ages | Source code |
| extract_reference | Source code |
| extract_type_common_csv | Source code |
| filter_countries | Source code |
| final_age_group_label | Source code |
| find_common_prefix | Source code |
| find_pair_key | Source code |
| find_unique_key | Man page Source code |
| flexible_countrycode | Source code |
| get_age_group_lower_limits | Source code |
| get_age_limits | Source code |
| get_citation | Man page Source code |
| get_mergeable_files | Source code |
| get_spectral_radius | Source code |
| get_survey | Man page Source code |
| get_survey_countries | Source code |
| has_names | Source code |
| impute_age_by_sample | Source code |
| impute_ages | Man page Source code |
| impute_contact_ages | Man page Source code |
| impute_participant_ages | Man page Source code |
| inform_longitudinal_key | Source code |
| is_contact_matrix | Man page Source code |
| is_doi | Man page Source code |
| join_compatible_files | Source code |
| join_possible_files | Source code |
| limits_to_agegroups | Man page Source code |
| list_surveys | Man page Source code |
| load_survey | Man page Source code |
| matrix_per_capita | Source code |
| matrix_plot | Man page Source code |
| max_participant_age | Source code |
| mean_contacts_per_person | Source code |
| merge_all_files | Source code |
| merge_participants_contacts | Source code |
| n_participants_per_age_group | Source code |
| na_in_weighted_matrix | Source code |
| new_contact_matrix | Man page Source code |
| new_contact_survey | Man page Source code |
| normalisation_factors | Source code |
| normalise_country_names | Man page Source code |
| normalise_weighted_matrix | Source code |
| normalise_weights | Man page Source code |
| normalise_weights_to_counts | Source code |
| per_capita | Man page Source code |
| plot.contact_matrix | Source code |
| polymod | Man page |
| pop_age | Man page Source code |
| print.contact_matrix | Source code |
| reduce_agegroups | Man page Source code |
| resolve_filter_target | Source code |
| resolve_longitudinal_key | Source code |
| resolve_survey_pop | Man page Source code |
| return_participant_weights | Source code |
| sample_contacts_participants | Source code |
| sample_from_age_distribution | Man page Source code |
| sample_from_participants | Source code |
| sample_present_age | Source code |
| sample_uniform_age | Source code |
| split_matrix | Man page Source code |
| split_mean_norm_contacts | Source code |
| survey | Man page Source code |
| survey_countries | Man page Source code |
| survey_country_population | Man page Source code |
| survey_is_representative | Source code |
| survey_pop_from_countries | Source code |
| survey_pop_from_data | Source code |
| survey_pop_reference | Source code |
| survey_pop_year | Source code |
| symmetrise | Man page Source code |
| try_merge_additional_files | Source code |
| try_merge_one_file | Source code |
| validate_age_distribution | Man page Source code |
| warn_counts_split_per_capita | Source code |
| warn_if_counts_and_split | Source code |
| warn_if_no_survey_countries | Source code |
| warn_merge_quality | Source code |
| warn_multiple_observations | Man page Source code |
| warn_norm_fct_exceed_thresh | Source code |
| warn_symmetric_counts_na | Source code |
| weigh | Man page Source code |
| weigh_by_user_defined | Source code |
| weigh_direct | Source code |
| weigh_grouped | Source code |
| weigh_named | Source code |
| weigh_population | Source code |
| weight_by_age | Source code |
| weight_by_day_of_week | Source code |
| weighted_matrix_array | Source code |
| wpp_age | Man page Source code |
| wpp_countries | Man page Source code |
