Man pages for socialmixr
Social Mixing Matrices for Infectious Disease Modelling
| add_age | Add age column from exact age (generic helper) |
| agegroups_to_limits | Convert age groups to lower age limits |
| as_contact_survey | Check contact survey data |
| assemble_survey | Assemble a contact survey with new participant/contact data |
| assign_age_groups | Assign age groups in survey data |
| check | Check contact survey data |
| clean | Clean contact survey data |
| compute_matrix | Compute contact matrix from prepared survey data |
| contact_age_distribution | Extract the empirical age distribution of contacts from a... |
| contact_matrix | Generate a contact matrix from diary survey data |
| copy_survey | Deep copy a contact survey |
| deprecate_arg | Handle deprecated argument |
| dot-get_survey | Internal function to get survey data |
| download_survey | Download a survey from its Zenodo repository |
| find_unique_key | Find the minimal unique key for a data.table |
| get_citation | Citation for a survey |
| get_survey | Get a survey, either from its Zenodo repository, a set of... |
| impute_ages | Impute ages from ranges (generic helper) |
| impute_contact_ages | Impute contact ages |
| impute_participant_ages | Impute participant ages |
| is_contact_matrix | Test whether an object is a contact_matrix |
| is_doi | Checks if a character string is a DOI |
| limits_to_agegroups | Convert lower age limits to age groups. |
| list_surveys | List all surveys available for download |
| load_survey | Load a survey from local files |
| matrix_plot | Draws an image plot of a contact matrix with a legend strip... |
| new_contact_matrix | Create a contact_matrix object |
| new_contact_survey | Contact survey |
| normalise_country_names | Normalise country names |
| normalise_weights | Post-stratification weight normalisation |
| per_capita | Convert a contact matrix to per-capita rates |
| polymod | Social contact data from 8 European countries |
| pop_age | Change age groups in population data |
| reduce_agegroups | Reduce the number of age groups given a broader set of limits |
| resolve_survey_pop | Resolve survey population to match matrix age groups |
| sample_from_age_distribution | Sample ages from a distribution within [min, max] bands |
| split_matrix | Decompose a contact matrix into mean contacts, normalisation... |
| sub-.contact_survey | Subset a contact survey |
| survey | Contact survey |
| survey_countries | List all countries contained in a survey |
| survey_country_population | Get survey country population data |
| symmetrise | Symmetrise a contact matrix |
| validate_age_distribution | Validate an age distribution data.frame |
| warn_multiple_observations | Warn if survey has multiple observations per participant |
| weigh | Weigh survey participants |
| wpp_age | Get age-specific population data according to the World... |
| wpp_countries | List all countries and regions for which socialmixr has... |
