Man pages for solarius
An R Interface to SOLAR
| annotate | Annotate SNPs in association study |
| annotateSNPs | Annotate SNPs |
| availableTransforms | Get a list of available transforms. |
| dat30 | dat30 data set adapted from multic R package |
| dat50 | dat50 data set adapted from FFBSKAT R package |
| df2solar | Export phenotype and pedigree data into SOLAR files |
| explainedVarProp | Get explained variances for a group of SOLAR models. |
| getFormulaStr | Get formula string from a solarPolygenic object |
| loadExamplesPhen | Load the example data (GAW10) from SOLAR. |
| loadMulticPhen | Load the complete data set from R package multic |
| matchIdNames | Match ID column names |
| matchMapNames | Match map column names |
| modelPar | Get a parameter value from 'solarius' models. |
| package.file | Alternative to system.file |
| plotKinship2 | Plot the double kinship matrix |
| plotPed | Plot the pedigree |
| plotQQManh | Plot the association results |
| plotRes | Plot the residuals of a polygenic model |
| readPhen | Read plain-text table files phen and ped |
| snp2solar | Export snp genotypes, genotype covariates and amp to SOLAR |
| solar | Call SOLAR program from R |
| solarAssoc | Run association analysis. |
| solarAssocClass | S3 class solarAssoc. |
| solarBaeysAvgPolygenicClass | S3 class solarBaeysAvgPolygenic |
| solarKinship2 | Compute empirical double kinship matrix by SOLAR |
| solarMultipoint | Run multipoint linkage analysis. |
| solarMultipointClass | S3 class solarMultipoint. |
| solarMultivarClass | S3 class solarMultivar. |
| solarPar | Get a parameter value from SOLAR model files. |
| solarPolyAssoc | S3 class solarPolyAssoc. |
| solarPolygenic | Run polygenic analysis. |
| solarPolygenicClass | S3 class solarPolygenic. |
| solarReadFiles | Read SOLAR output files in a directory |
| tabplot | S3 method tabplot |
| transformData | Apply transforms to a data set. |
| transformTrait | Transform a trait. |
