df2solar: Export phenotype and pedigree data into SOLAR files
In solarius: An R Interface to SOLAR

The function exports phenotype and pedigree data from R to SOLAR.

1	df2solar(df, dir, kinship, kin2.gz = "kin2.gz", sort.ped = TRUE)

`df`	A data frame that containts both phenotype and pedigree data.
`dir`	A character with path to a directory, where SOLAR files to be created.
`kinship`	(optional) A kinship matrix to be exported.
`kin2.gz`	A character with file name of SOLAR file to store the kinship matrix.
`sort.ped`	Logical, indicating where pedigree IDs (FAM or FAMID) to be sorted. The default value is TRUE.

The function (1) puts the data df in SOLAR format, (2) separates it into two parts, pedigree and phenotypes, and then (3) expots both data sets in the directory dir.

Pedigree or ID variables are detected by matchIdNames function.

solarius documentation built on May 2, 2019, 2:43 a.m.