plot_slice_map_inter: Plot an interactive slice map from a data array where voxels...

In spant: MR Spectroscopy Analysis Tools

Plot an interactive slice map from a data array where voxels can be selected to display a corresponding spectrum.

Description

Plot an interactive slice map from a data array where voxels can be selected to display a corresponding spectrum.

Usage

plot_slice_map_inter(
  mrs_data,
  map = NULL,
  xlim = NULL,
  slice = 1,
  zlim = NULL,
  mask_map = NULL,
  denom = NULL,
  mask_cutoff = 20,
  interp = 1,
  mode = "re",
  y_scale = FALSE,
  ylim = NULL,
  coil = 1,
  fd = TRUE
)

Arguments

mrs_data	spectral data.
map	array of values to be plotted, defaults to the integration of the modulus of the full spectral width.
xlim	spectral region to plot.
slice	the slice index to plot.
zlim	smallest and largest values to be plotted.
mask_map	matching map with logical values to indicate if the corresponding values should be plotted.
denom	map to use as a denominator.
mask_cutoff	minimum values to plot (as a percentage of the maximum).
interp	map interpolation factor.
mode	representation of the complex spectrum to be plotted, can be one of: "re", "im", "mod" or "arg".
y_scale	option to display the y-axis values (logical).
ylim	intensity range to plot.
coil	coil element to plot.
fd	display data in the frequency-domain (default), or time-domain (logical).

spant documentation built on Sept. 11, 2024, 9:13 p.m.