API for spant
MR Spectroscopy Analysis Tools

Global functions
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.onAttach Source code
.onLoad Source code
Arg.mrs_data Man page Source code
Conj.mrs_data Man page Source code
G Source code
H Source code
Im.mrs_data Man page Source code
Im_pauli Source code
Ip_pauli Source code
Ix_pauli Source code
Iy_pauli Source code
Iz_pauli Source code
L Source code
Mod.mrs_data Man page Source code
Ncoils Man page Source code
Ndyns Man page Source code
Npts Man page Source code
Nspec Man page Source code
Nx Man page Source code
Ny Man page Source code
Nz Man page Source code
Re.mrs_data Man page Source code
`*.mrs_data` Source code
`+.mrs_data` Source code
`-.mrs_data` Source code
`/.mrs_data` Source code
abfit Source code
abfit_3p_obj Source code
abfit_full_anal_jac Source code
abfit_full_anal_jac_test Source code
abfit_full_num_jac Source code
abfit_full_obj Source code
abfit_opts Man page Source code
abfit_partial_num_jac Source code
acquire Man page Source code
add_alpha Source code
align Man page Source code
alpha2lw Source code
apodise_xy Man page Source code
append_basis Man page Source code
append_coils Man page Source code
append_dyns Man page Source code
append_scan Source code
apply_axes Man page Source code
apply_mrs Man page Source code
apply_pvc Man page Source code
array2mrs_data Man page Source code
asy_fwhm_fn Source code
asy_pvoigt_ls Source code
auto_phase Man page Source code
auto_phase_vec Source code
auto_pspline_smoother Source code
back_extrap_ar Man page Source code
back_extrap_vec Source code
basis2mrs_data Man page Source code
bbase Man page Source code
bc Source code
bc_als Man page Source code
bc_als_vec Source code
bc_constant Man page Source code
beta2lw Man page Source code
calc_ahat Source code
calc_coil_noise_cor Man page Source code
calc_coil_noise_sd Man page Source code
calc_ed_from_lambda Man page Source code
calc_ed_from_lambda_stable Source code
calc_lambda_from_ed Source code
calc_peak_info_vec Man page Source code
calc_sd_poly Man page Source code
calc_spec_diff Man page Source code
calc_spec_snr Man page Source code
check_geom Source code
check_lcm Man page Source code
check_mrs_data Source code
check_tqn Man page Source code
circ_mask Man page Source code
colSdColMeans Source code
collapse_to_dyns Man page Source code
collapse_to_dyns.fit_result Man page Source code
collapse_to_dyns.mrs_data Man page Source code
comb_coils Man page Source code
comb_csv_results Man page Source code
comb_fits Man page Source code
comb_metab_ref Man page Source code
conv_align Source code
conv_filt_vec Source code
conv_mrs Man page Source code
cplx_median Source code
cplx_sum_sq Source code
crop_range Source code
crop_spec Man page Source code
crop_td_pts Man page Source code
crop_xy Man page Source code
cross Source code
crossprod_3d Man page Source code
decimate_mrs_fd Man page Source code
decimate_mrs_td Man page Source code
def_N Man page Source code
def_acq_paras Man page Source code
def_fs Man page Source code
def_ft Man page Source code
def_nuc Man page Source code
def_ref Man page Source code
depth Source code
diff_mrs Man page Source code
dim.fit_result Source code
dim.mrs_data Source code
downsample_mrs_fd Man page Source code
downsample_mrs_td Man page Source code
ecc Man page Source code
ecc_1d_array Source code
ecc_2d_array Source code
ecc_ref Source code
ed_obj_fn Source code
est_noise_sd Man page Source code
est_noise_sd_vec Source code
fd2td Man page Source code
fd_conv_filt Man page Source code
fit_amps Man page Source code
fit_diags Man page Source code
fit_mrs Man page Source code
fit_res2csv Man page Source code
fp_mag Source code
fp_phase Man page Source code
fp_phase_correct Man page Source code
fp_scale Man page Source code
fs Man page Source code
ft Source code
ft_shift Man page Source code
ft_shift_mat Man page Source code
gen_F Man page Source code
gen_F_xy Man page Source code
gen_I Source code
generate_sp_basis Source code
get_1h_brain_basis_paras Man page Source code
get_1h_brain_basis_paras_v1 Man page Source code
get_1h_brain_basis_paras_v2 Man page Source code
get_1h_brain_basis_paras_v3 Man page Source code
get_2d_psf Man page Source code
get_a_glc_paras Source code
get_acq_paras Man page Source code
get_ala_paras Source code
get_asc_paras Source code
get_asp_paras Source code
get_b_glc_paras Source code
get_bhb_paras Source code
get_cho_paras Source code
get_corr_factor Source code
get_cr_ch2_paras Source code
get_cr_ch3_paras Source code
get_cr_paras Source code
get_dyns Man page Source code
get_even_dyns Man page Source code
get_fh_dyns Man page Source code
get_fit_map Man page Source code
get_fit_table Man page Source code
get_fp Man page Source code
get_gaba_jn_paras Source code
get_gaba_paras Source code
get_gaba_rt_paras Source code
get_glc_paras Source code
get_gln_paras Source code
get_glu_paras Source code
get_glu_rt_paras Source code
get_gly_paras Source code
get_gpc_paras Source code
get_gsh_paras Source code
get_guassian_pulse Man page Source code
get_ins_paras Source code
get_ins_rt_paras Source code
get_lac_paras Source code
get_lac_rt_paras Source code
get_lip09_paras Source code
get_lip13a_paras Source code
get_lip13b_paras Source code
get_lip20_paras Source code
get_m_cr_ch2_paras Source code
get_metab Man page Source code
get_mm09_paras Source code
get_mm12_paras Source code
get_mm14_paras Source code
get_mm17_paras Source code
get_mm20_paras Source code
get_mm_3t_paras Source code
get_mol_names Man page Source code
get_mol_para_list_names Source code
get_mol_paras Man page Source code
get_mrs_affine Source code
get_mrsi2d_seg Man page Source code
get_mrsi_voi Man page Source code
get_mrsi_voxel Man page Source code
get_mrsi_voxel_xy_psf Man page Source code
get_naa2_paras Source code
get_naa_paras Source code
get_naa_rt_paras Source code
get_naag_ch3_paras Source code
get_naag_paras Source code
get_odd_dyns Man page Source code
get_para_val Source code
get_pch_paras Source code
get_pcr_paras Source code
get_peth_paras Source code
get_pfile_dict Source code
get_pfile_vars Source code
get_ref Man page Source code
get_seg_ind Man page Source code
get_ser_paras Source code
get_sh_dyns Man page Source code
get_sins_paras Source code
get_slice Man page Source code
get_spin_num Source code
get_subset Man page Source code
get_suc_paras Source code
get_svs_voi Man page Source code
get_tau_paras Source code
get_td_amp Man page Source code
get_uncoupled_mol Man page Source code
get_voi_cog Man page Source code
get_voi_seg Man page Source code
get_voi_seg_psf Man page Source code
get_voxel Man page Source code
grid_shift_xy Man page Source code
gridplot Man page Source code
gridplot.mrs_data Man page Source code
guess_mrs_format Source code
hamming_vec Source code
hilbert Source code
hsvd Man page Source code
hsvd_filt Man page Source code
hsvd_filt_vec Source code
hsvd_vec Man page Source code
hz Man page Source code
hz2ppm Source code
ift Source code
ift_shift Man page Source code
ift_shift_mat Man page Source code
image.mrs_data Man page Source code
img2kspace_xy Man page Source code
int_spec Man page Source code
interleave_dyns Man page Source code
inv_even_dyns Man page Source code
inv_odd_dyns Man page Source code
is.installed Source code
is_fd Man page Source code
kspace2img_xy Man page Source code
l2_reg Man page Source code
lb Man page Source code
lb.basis_set Man page Source code
lb.mrs_data Man page Source code
lcmodel_fit Source code
lw2alpha Man page Source code
lw2beta Man page Source code
lw_obj_fn Source code
mask_dyns Man page Source code
mask_xy Man page Source code
mask_xy_mat Man page Source code
mat2mrs_data Man page Source code
max_mrs Man page Source code
max_mrs_interp Man page Source code
mean.mrs_data Man page Source code
mean_dyn_blocks Man page Source code
mean_dyn_pairs Man page Source code
mean_dyns Man page Source code
measure_lorentz_amp Source code
measure_td_amp Source code
median_dyns Man page Source code
mrs_data2basis Man page Source code
mrs_data2mat Man page Source code
mrs_data2vec Man page Source code
mvfftshift Man page Source code
mvifftshift Man page Source code
n2coord Man page Source code
n2hz Source code
nifti_flip_lr Man page Source code
nnls Source code
norm_mrs Man page Source code
optim_fp Source code
optim_rats Source code
optim_set_lw Source code
ortho3 Man page Source code
ortho3_int Man page Source code
peak_info Man page Source code
pg_extrap_xy Man page Source code
phase Man page Source code
phase_drift_obj_fn_td Source code
phase_obj_fn Source code
plot.basis_set Source code
plot.fit_result Man page Source code
plot.mrs_data Man page Source code
plot_bc Man page Source code
plot_slice_fit Man page Source code
plot_slice_fit_inter Man page Source code
plot_slice_map Man page Source code
plot_slice_map_inter Man page Source code
plot_voi_overlay Man page Source code
plot_voi_overlay_seg Man page Source code
pnnls Source code
ppm Man page Source code
ppm.fit_result Man page Source code
ppm.mrs_data Man page Source code
ppm2hz Source code
precomp Man page Source code
print.basis_set Source code
print.fit_result Man page Source code
print.mol_parameters Source code
print.mrs_data Man page Source code
pts Source code
qn_states Man page Source code
quick_phase_ref Source code
rats Man page Source code
rats_obj_fn Source code
re_max Source code
re_max_interp Source code
re_mean Source code
re_sd Source code
re_weighting Man page Source code
readNifti Man page
read_basis Man page Source code
read_char Source code
read_float32 Source code
read_ima Source code
read_ima_coil_dir Man page Source code
read_ima_dyn_dir Man page Source code
read_int16 Source code
read_int32 Source code
read_lcm_coord Man page Source code
read_lcm_raw Source code
read_list_data Source code
read_mrs Man page Source code
read_mrs_dpt Man page Source code
read_mrs_nifti Source code
read_mrs_tqn Man page Source code
read_paravis_raw Source code
read_pfile Source code
read_pfile_header Source code
read_rda Source code
read_sdat Source code
read_sdat_slow Source code
read_siemens_txt_hdr Man page Source code
read_spar_sdat Source code
read_tqn_fit Man page Source code
read_tqn_result Man page Source code
read_twix Source code
read_uint16 Source code
read_uint32 Source code
read_uint64 Source code
read_varian Source code
recon_imag Source code
recon_imag_vec Source code
reexports Man page
rep_array_dim Man page Source code
rep_dyn Man page Source code
rep_mrs Man page Source code
resample_img Man page Source code
resample_voi Man page Source code
reslice_to_mrs Man page Source code
reson_table2mrs_data Man page Source code
rm_dyns Man page Source code
rotate_vec Source code
scale_amp_molal_pvc Man page Source code
scale_amp_molar Man page Source code
scale_amp_ratio Man page Source code
scale_amp_water_ratio Man page Source code
sd Man page Source code
sd.default Source code
sd.mrs_data Man page Source code
seconds Man page Source code
seq_cpmg_ideal Man page Source code
seq_mega_press_ideal Man page Source code
seq_press_ideal Man page Source code
seq_pulse_acquire Man page Source code
seq_pulse_acquire_31p Man page Source code
seq_slaser_ideal Man page Source code
seq_spin_echo_ideal Man page Source code
seq_spin_echo_ideal_31p Man page Source code
seq_steam_ideal Man page Source code
set_def_acq_paras Man page Source code
set_dyns Source code
set_lcm_cmd Man page Source code
set_lw Man page Source code
set_precomp_mode Man page Source code
set_precomp_verbose Man page Source code
set_ref Man page Source code
set_td_pts Man page Source code
set_tqn_cmd Man page Source code
shift Man page Source code
shift_hz Source code
sim_basis Man page Source code
sim_basis_1h_brain Man page Source code
sim_basis_1h_brain_press Man page Source code
sim_basis_tqn Man page Source code
sim_brain_1h Man page Source code
sim_mol Man page Source code
sim_noise Man page Source code
sim_resonances Man page Source code
sim_resonances_fast Source code
sim_resonances_fast2 Source code
sim_zeros Source code
smooth_high_freq_vec Source code
sort_basis Source code
spant Man page
spant-package Man page
spant_mpress_drift Man page
spin_sys Man page Source code
split_metab_ref Source code
spm_pve2categorical Man page Source code
ssp Man page Source code
stackplot Man page Source code
stackplot.basis_set Source code
stackplot.fit_result Man page Source code
stackplot.list Source code
stackplot.mrs_data Man page Source code
sum_coils Man page Source code
sum_dyns Man page Source code
summary.fit_result Source code
tarquin_fit Source code
td2fd Man page Source code
td_conv_filt Man page Source code
tdsr Man page Source code
test_fit Source code
tpower Source code
varpro Source code
varpro_3_para Source code
varpro_3_para_anal_jac Source code
varpro_3_para_obj Source code
varpro_3_para_opts Man page Source code
varpro_anal_jac Source code
varpro_obj Source code
varpro_opts Man page Source code
vaxf2numeric Source code
vec2mrs_data Man page Source code
write_basis Man page Source code
write_basis_tqn Man page Source code
write_mrs Man page Source code
write_mrs_dpt_v2 Source code
write_mrs_lcm_raw Source code
write_mrs_nifti Man page Source code
write_mrs_rds Source code
zero_nzoc Man page Source code
zf Man page Source code
zf.basis_set Man page Source code
zf.mrs_data Man page Source code
zf_xy Man page Source code
zp_vec Source code
spant documentation built on Nov. 18, 2020, 9:07 a.m.