Files in spant
MR Spectroscopy Analysis Tools
MD5
NEWS.md
NAMESPACE
DESCRIPTION
R/mol_parameters.R
R/fitting.R
R/mrs_write_nifti.R
R/fit_display.R
R/pnnls.R
R/precomp.R
R/mrs_data_display.R
R/varpro_3_para.R
R/interactive_plotting.R
R/data.R
R/varpro_basic.R
R/mrs_read_paravis.R
R/rats.R
R/mrs_read_pfile.R
R/mrs_read_rda.R
R/benchmark.R
R/spant.R
R/mrs_read_dicom.R
R/mrs_read_list_data.R
R/mrs_read_ima.R
R/image_reg.R
R/mrs_data_proc.R
R/lofdc.R
R/svs_batch_fit.R
R/mrs_read_spar_sdat.R
R/mrs_read_varian.R
R/mrs_read_nifti.R
R/varpro.R
R/pulse_sequences.R
R/pulse_shapes.R
R/mrs_read_lcm_raw.R
R/mrs_data_io.R
R/tdsr.R
R/mrs_read_twix.R
R/dicom_reader.R
R/qm_simulation.R
R/amp_scaling.R
R/relaxation_fitting.R
R/mrs_read_jmrui_txt.R
R/utils.R
R/abfit.R
R/basis_set.R
R/gsl_functions.R
src/lsei.f
src/init.c
src/pnnls.f
inst/CITATION
inst/WORDLIST
inst/doc/spant-preprocessing.html
inst/doc/spant-basis-simulation.html
inst/doc/spant-preprocessing.Rmd
inst/doc/spant-metabolite-simulation.html
inst/doc/spant-basis-simulation.R
inst/doc/spant-metabolite-simulation.Rmd
inst/doc/spant-basis-simulation.Rmd
inst/doc/abfit-baseline-opts.R
inst/doc/spant-intro.R
inst/doc/spant-intro.Rmd
inst/doc/abfit-baseline-opts.html
inst/doc/abfit-baseline-opts.Rmd
inst/doc/spant-intro.html
inst/doc/spant-preprocessing.R
inst/doc/spant-metabolite-simulation.R
inst/extdata/philips_spar_sdat_WS.SDAT
inst/extdata/philips_spar_sdat_W.SDAT
inst/extdata/philips_spar_sdat_W.SPAR
inst/extdata/philips_spar_sdat_WS.SPAR
inst/reports/mpress_gaba.Rmd
build/vignette.rds
tests/testthat.R
tests/testthat/abfit_res_fine.rds
tests/testthat/abfit_sim_res.rds
tests/testthat/abfit_res_default.rds
tests/testthat/abfit_sim_mrs_data.rds
tests/testthat/test_fitting.R
tests/testthat/abfit_res_coarse.rds
tests/testthat/def_basis.rds
tests/testthat/test_preproc.R
tests/testthat/test_qm_sim.R
tests/testthat/test_nifti.R
tests/testthat/abfit_res_no_optim.rds
vignettes/spant-preprocessing.Rmd
vignettes/spant-metabolite-simulation.Rmd
vignettes/spant-basis-simulation.Rmd
vignettes/spant-intro.Rmd
vignettes/abfit-baseline-opts.Rmd
data/spant_mpress_drift.rda
man/fd2td.Rd
man/read_pulse_bruker.Rd
man/scale_amp_molal.Rd
man/auto_phase.Rd
man/get_uncoupled_mol.Rd
man/ortho3.Rd
man/fit_t1_ti_array.Rd
man/get_1h_brain_basis_paras_v3.Rd
man/beta2lw.Rd
man/sim_basis_1h_brain.Rd
man/get_1h_brain_basis_paras_v1.Rd
man/seq_pulse_acquire.Rd
man/bc_poly.Rd
man/plot.mrs_data.Rd
man/sim_resonances.Rd
man/mask_xy.Rd
man/add_noise.Rd
man/recon_imag_vec.Rd
man/reslice_to_mrs.Rd
man/write_mrs_nifti.Rd
man/fp_scale.Rd
man/print.fit_result.Rd
man/read_mrs_tqn.Rd
man/read_siemens_txt_hdr.Rd
man/resample_basis.Rd
man/def_nuc.Rd
man/mean.list.Rd
man/bc_gauss.Rd
man/calc_coil_noise_cor.Rd
man/fd_conv_filt.Rd
man/mvfftshift.Rd
man/gen_F.Rd
man/Conj.mrs_data.Rd
man/comb_coils.Rd
man/Npts.Rd
man/read_lcm_coord.Rd
man/sim_basis.Rd
man/Arg.mrs_data.Rd
man/re_weighting.Rd
man/reexports.Rd
man/Re.mrs_data.Rd
man/decimate_mrs_fd.Rd
man/def_N.Rd
man/sort_basis.Rd
man/get_mol_paras.Rd
man/dicom_reader.Rd
man/get_metab.Rd
man/get_basis_subset.Rd
man/get_slice.Rd
man/hsvd_vec.Rd
man/mean.mrs_data.Rd
man/ft_dyns.Rd
man/basis2mrs_data.Rd
man/get_guassian_pulse.Rd
man/inv_even_dyns.Rd
man/resample_voi.Rd
man/sim_zero.Rd
man/mean_dyns.Rd
man/scale_mrs_amp.Rd
man/recon_twix_2d_mrsi.Rd
man/seq_steam_ideal.Rd
man/tdsr.Rd
man/calc_spec_snr.Rd
man/ppm.Rd
man/scale_amp_ratio.Rd
man/fs.Rd
man/plot_slice_map.Rd
man/apply_axes.Rd
man/comb_fit_tables.Rd
man/acquire.Rd
man/stackplot.fit_result.Rd
man/zf_xy.Rd
man/hsvd.Rd
man/apodise_xy.Rd
man/hsvd_filt.Rd
man/fp_phase.Rd
man/mean_dyn_pairs.Rd
man/mask_xy_corners.Rd
man/fit_t1_tr_array.Rd
man/set_def_acq_paras.Rd
man/max_mrs_interp.Rd
man/mask_dyns.Rd
man/set_precomp_verbose.Rd
man/abfit_opts_v1_9_0.Rd
man/diff_mrs.Rd
man/ssp.Rd
man/get_head_dyns.Rd
man/sim_brain_1h.Rd
man/get_mrsi_voxel_xy_psf.Rd
man/fit_t2_te_array.Rd
man/read_ima_dyn_dir.Rd
man/ecc.Rd
man/gausswin_2d.Rd
man/sim_basis_1h_brain_press.Rd
man/is_fd.Rd
man/def_ref.Rd
man/append_coils.Rd
man/l2_reg.Rd
man/sub_first_dyn.Rd
man/qn_states.Rd
man/gen_I.Rd
man/hz.Rd
man/back_extrap_ar.Rd
man/coherence_filter.Rd
man/get_acq_paras.Rd
man/plot_slice_fit.Rd
man/shift.Rd
man/calc_sd_poly.Rd
man/crop_td_pts.Rd
man/get_voi_seg_psf.Rd
man/gen_F_xy.Rd
man/lb.Rd
man/seq_steam_ideal_cof.Rd
man/tr.Rd
man/set_Ntrans.Rd
man/vec2mrs_data.Rd
man/mrs_data2vec.Rd
man/mask_fit_res.Rd
man/scale_basis_amp.Rd
man/svs_1h_brain_analysis.Rd
man/bin_spec.Rd
man/plot_slice_fit_inter.Rd
man/calc_peak_info_vec.Rd
man/get_fit_map.Rd
man/rep_mrs.Rd
man/plot_voi_overlay_seg.Rd
man/ift_shift_mat.Rd
man/get_voi_cog.Rd
man/lofdc.Rd
man/get_voxel.Rd
man/mvifftshift.Rd
man/set_td_pts.Rd
man/plot_bc.Rd
man/gridplot.Rd
man/scale_basis_from_singlet.Rd
man/mrs_data2mat.Rd
man/abfit_opts.Rd
man/print.mrs_data.Rd
man/align.Rd
man/crop_td_pts_pot.Rd
man/downsample_mrs_td.Rd
man/varpro_3_para_opts.Rd
man/get_seg_ind.Rd
man/conv_mrs.Rd
man/nifti_flip_lr.Rd
man/get_mrsi_voxel.Rd
man/sd.mrs_data.Rd
man/rats.Rd
man/matexp.Rd
man/get_tqn_cmd.Rd
man/write_basis.Rd
man/scale_amp_ratio_value.Rd
man/ift_shift.Rd
man/set_ref.Rd
man/td_conv_filt.Rd
man/def_ft.Rd
man/median_dyns.Rd
man/sim_basis_tqn.Rd
man/calc_coil_noise_sd.Rd
man/gridplot.mrs_data.Rd
man/set_tqn_cmd.Rd
man/spant_abfit_benchmark.Rd
man/zero_higher_orders.Rd
man/plot_spec_sd.Rd
man/mod_td.Rd
man/crop_xy.Rd
man/interleave_dyns.Rd
man/set_mask_xy_mat.Rd
man/get_lcm_cmd.Rd
man/reson_table2mrs_data.Rd
man/crop_basis.Rd
man/array2mrs_data.Rd
man/plot_slice_map_inter.Rd
man/downsample_mrs_fd.Rd
man/inv_odd_dyns.Rd
man/sum_mrs_list.Rd
man/mrs_data2basis.Rd
man/get_fp.Rd
man/smooth_dyns.Rd
man/rm_dyns.Rd
man/phase.Rd
man/one_page_pdf.Rd
man/zero_fade_spec.Rd
man/scale_spec.Rd
man/find_mrs_files.Rd
man/get_odd_dyns.Rd
man/seq_press_ideal.Rd
man/elliptical_mask.Rd
man/bc_als.Rd
man/Nspec.Rd
man/ortho3_inter.Rd
man/spant-package.Rd
man/Ncoils.Rd
man/get_mrsi_voi.Rd
man/bbase.Rd
man/read_tqn_fit.Rd
man/ft_shift_mat.Rd
man/mean_vec_blocks.Rd
man/is.def.Rd
man/lw2beta.Rd
man/comb_metab_ref.Rd
man/Ny.Rd
man/stackplot.mrs_data.Rd
man/read_basis.Rd
man/read_mrs.Rd
man/read_ima_coil_dir.Rd
man/sim_noise.Rd
man/read_pulse_pta.Rd
man/rep_array_dim.Rd
man/Im.mrs_data.Rd
man/seconds.Rd
man/ft_shift.Rd
man/get_subset.Rd
man/sum_coils.Rd
man/get_mrs_affine.Rd
man/scale_amp_molal_pvc.Rd
man/mat2mrs_data.Rd
man/get_ref.Rd
man/write_mrs.Rd
man/recon_imag.Rd
man/comb_fit_list_result_tables.Rd
man/mean_dyn_blocks.Rd
man/fit_mrs.Rd
man/sum_mrs.Rd
man/fit_diags.Rd
man/max_mrs.Rd
man/shift_basis.Rd
man/spm_pve2categorical.Rd
man/check_lcm.Rd
man/set_lcm_cmd.Rd
man/scale_amp_molar.Rd
man/fit_amps.Rd
man/Imzap.Rd
man/sim_basis_mm_lip_lcm.Rd
man/seq_slaser_ideal.Rd
man/mean_mrs_list.Rd
man/get_1h_brain_basis_paras_v2.Rd
man/check_tqn.Rd
man/fp_phase_correct.Rd
man/scale_amp_molar2molal_pvc.Rd
man/get_mol_names.Rd
man/plot_voi_overlay.Rd
man/get_2d_psf.Rd
man/make_basis_from_raw.Rd
man/mask_xy_ellipse.Rd
man/sub_mean_dyns.Rd
man/zf.Rd
man/set_tr.Rd
man/set_lw.Rd
man/get_voi_seg.Rd
man/apply_mrs.Rd
man/get_td_amp.Rd
man/seq_mega_press_ideal.Rd
man/set_precomp_mode.Rd
man/def_fs.Rd
man/seq_steam_ideal_young.Rd
man/mask_xy_mat.Rd
man/kspace2img_xy.Rd
man/get_sh_dyns.Rd
man/Mod.mrs_data.Rd
man/fit_res2csv.Rd
man/Ntrans.Rd
man/svs_1h_brain_batch_analysis.Rd
man/get_dyns.Rd
man/apply_pulse.Rd
man/crop_spec.Rd
man/circ_mask.Rd
man/spant_mpress_drift.Rd
man/write_basis_tqn.Rd
man/bc_constant.Rd
man/sd.Rd
man/bc_spline.Rd
man/lw2alpha.Rd
man/append_basis.Rd
man/calc_ed_from_lambda.Rd
man/crossprod_3d.Rd
man/img2kspace_xy.Rd
man/plot.fit_result.Rd
man/spec_decomp.Rd
man/spin_sys.Rd
man/seq_cpmg_ideal.Rd
man/precomp.Rd
man/n2coord.Rd
man/sim_mol.Rd
man/varpro_opts.Rd
man/deconv_mrs.Rd
man/stackplot.Rd
man/Nx.Rd
man/zero_td_pts_end.Rd
man/varpro_basic_opts.Rd
man/collapse_to_dyns.Rd
man/calc_spec_diff.Rd
man/def_acq_paras.Rd
man/get_mrsi2d_seg.Rd
man/append_dyns.Rd
man/seq_spin_echo_ideal.Rd
man/image.mrs_data.Rd
man/sum_dyns.Rd
man/spant_simulation_benchmark.Rd
man/rep_dyn.Rd
man/pg_extrap_xy.Rd
man/est_noise_sd.Rd
man/get_svs_voi.Rd
man/Ndyns.Rd
man/Nz.Rd
man/get_1h_brain_basis_paras.Rd
man/resample_img.Rd
man/scale_amp_water_ratio.Rd
man/get_fh_dyns.Rd
man/grid_shift_xy.Rd
man/comb_fit_list_fit_tables.Rd
man/fd_gauss_smo.Rd
man/td2fd.Rd
man/peak_info.Rd
man/rectangular_mask.Rd
man/get_tail_dyns.Rd
man/crop_td_pts_end.Rd
man/read_tqn_result.Rd
man/get_even_dyns.Rd
man/int_spec.Rd
man/decimate_mrs_td.Rd
man/spec_op.Rd
man/sim_th_excit_profile.Rd
man/figures/logo.png
