stackplot.fit_result: Plot the fitting results of an object of class 'fit_result'...

In spant: MR Spectroscopy Analysis Tools

Plot the fitting results of an object of class fit_result with individual basis set components shown.

Description

Plot the fitting results of an object of class fit_result with individual basis set components shown.

Usage

## S3 method for class 'fit_result'
stackplot(
  x,
  xlim = NULL,
  y_offset = 0,
  dyn = 1,
  x_pos = 1,
  y_pos = 1,
  z_pos = 1,
  coil = 1,
  n = NULL,
  sub_bl = FALSE,
  labels = FALSE,
  label_names = NULL,
  sig_col = "black",
  restore_def_par = TRUE,
  omit_signals = NULL,
  combine_lipmm = FALSE,
  combine_metab = FALSE,
  mar = NULL,
  show_grid = TRUE,
  grid_nx = NULL,
  grid_ny = NA,
  invert_fit = FALSE,
  ...
)

Arguments

x	fit_result object.
xlim	the range of values to display on the x-axis, eg xlim = c(4,1).
y_offset	separate basis signals in the y-axis direction by this value.
dyn	the dynamic index to plot.
x_pos	the x index to plot.
y_pos	the y index to plot.
z_pos	the z index to plot.
coil	the coil element number to plot.
n	single index element to plot (overrides other indices when given).
sub_bl	subtract the baseline from the data and fit (logical).
labels	print signal labels at the right side of the plot.
label_names	provide a character vector of signal names to replace the defaults determined from the basis set.
sig_col	colour of individual signal components.
restore_def_par	restore default plotting par values after the plot has been made.
omit_signals	a character vector of basis signal names to be removed from the plot.
combine_lipmm	combine all basis signals with names starting with "Lip" or "MM".
combine_metab	combine all basis signals with names not starting with "Lip" or "MM".
mar	option to adjust the plot margins. See ?par.
show_grid	plot gridlines behind the data (logical). Defaults to TRUE.
grid_nx	number of cells of the grid in x and y direction. When NULL the grid aligns with the tick marks on the corresponding default axis (i.e., tickmarks as computed by axTicks). When NA, no grid lines are drawn in the corresponding direction.
grid_ny	as above.
invert_fit	show the fit result "upside-down"/
...	further arguments to plot method.

spant documentation built on Sept. 11, 2024, 9:13 p.m.