generate_blockdiag: Generates data from 'K' multivariate normal data populations,...

In sparsediscrim: Sparse and Regularized Discriminant Analysis

Description

This function generates K multivariate normal data sets, where each class is generated with a constant mean vector and a covariance matrix consisting of block-diagonal autocorrelation matrices. The data are returned as a single matrix x along with a vector of class labels y that indicates class membership.

Usage

generate_blockdiag(n, mu, num_blocks, block_size, rho, sigma2 = rep(1, K))

Arguments

n	vector of the sample sizes of each class. The length of n determines the number of classes K.
mu	matrix containing the mean vectors for each class. Expected to have p rows and K columns.
num_blocks	the number of block matrices. See details.
block_size	the dimensions of the square block matrix. See details.
rho	vector of the values of the autocorrelation parameter for each class covariance matrix. Must equal the length of n (i.e., equal to K).
sigma2	vector of the variance coefficients for each class covariance matrix. Must equal the length of n (i.e., equal to K).

Details

For simplicity, we assume that a class mean vector is constant for each feature. That is, we assume that the mean vector of the kth class is c_k * j_p, where j_p is a p \times 1 vector of ones and c_k is a real scalar.

The kth class covariance matrix is defined as

Σ_k = Σ^{(ρ)} \oplus Σ^{(-ρ)} \oplus … \oplus Σ^{(ρ)},

where \oplus denotes the direct sum and the (i,j)th entry of Σ^{(ρ)} is

Σ_{ij}^{(ρ)} = \{ ρ^{|i - j|} \}.

The matrix Σ^{(ρ)} is referred to as a block. Its dimensions are provided in the block_size argument, and the number of blocks are specified in the num_blocks argument.

Each matrix Σ_k is generated by the cov_block_autocorrelation() function.

The number of classes K is determined with lazy evaluation as the length of n.

The number of features p is computed as block_size * num_blocks.

Value

named list with elements:

• x: matrix of observations with n rows and p columns

• y: vector of class labels that indicates class membership for each observation (row) in x.

Examples

# Generates data from K = 3 classes.
means <- matrix(rep(1:3, each=9), ncol=3)
data <- generate_blockdiag(n = c(15, 15, 15), block_size = 3, num_blocks = 3,
rho = seq(.1, .9, length = 3), mu = means)
data$x
data$y

# Generates data from K = 4 classes. Notice that we use specify a variance.
means <- matrix(rep(1:4, each=9), ncol=4)
data <- generate_blockdiag(n = c(15, 15, 15, 20), block_size = 3, num_blocks = 3,
rho = seq(.1, .9, length = 4), mu = means)
data$x
data$y

sparsediscrim documentation built on July 1, 2021, 9:07 a.m.