efast_generate_medians_for_all_parameter_subsets: Generates summary file for stochastic simulations stored in...
In spartan: Simulation Parameter Analysis R Toolkit ApplicatioN: 'spartan'

Only to be applied in cases where simulation responses are supplied in the folder structure shown in the R Journal paper, useful for cases where the simulation is agent-based. Iterates through the folder structure analysing the result of each replicate run under the same parameter conditions, creating a CSV file for each curve/parameter pair. This will hold the parameters of the run and the median of each simulation response for that run. As stated earlier, more than one run result can exist in this file. Where a simulation is being analysed for multiple timepoints, this will iterate through the results at all timepoints, creating curve/parameter pair CSV files for all specified timepoints.

efast_generate_medians_for_all_parameter_subsets(FILEPATH, NUMCURVES,
  PARAMETERS, NUMSAMPLES, NUMRUNSPERSAMPLE, MEASURES, RESULTFILENAME,
  ALTERNATIVEFILENAME, OUTPUTCOLSTART, OUTPUTCOLEND, TIMEPOINTS = NULL,
  TIMEPOINTSCALE = NULL, check_done = FALSE, current_time = NULL)

`FILEPATH`	Directory where the simulation runs can be found, in folders or in CSV file format
`NUMCURVES`	The number of 'resamples' to perform (see eFAST documentation) - recommend using at least 3
`PARAMETERS`	Array containing the names of the parameters of which parameter samples will be generated
`NUMSAMPLES`	The number of parameter subsets that were generated in the eFAST design
`NUMRUNSPERSAMPLE`	The number of runs performed for each parameter subset. This figure can be generated through Aleatory Analysis
`MEASURES`	Array containing the names of the output measures which are used to analyse the simulation
`RESULTFILENAME`	Name of the simulation results file. In the current version, XML and CSV files can be processed. If performing this analysis over multiple timepoints, it is assumed that the timepoint follows the file name, e.g. trackedCells_Close_12.csv.
`ALTERNATIVEFILENAME`	In some cases, it may be relevant to read from a further results file if the initial file contains no results. This filename is set here. In the current version, XML and CSV files can be processed.
`OUTPUTCOLSTART`	Column number in the simulation results file where output begins - saves (a) reading in unnecessary data, and (b) errors where the first column is a label, and therefore could contain duplicates.
`OUTPUTCOLEND`	Column number in the simulation results file where the last output measure is. Only required if running the first method.
`TIMEPOINTS`	Implemented so this method can be used when analysing multiple simulation timepoints. If only analysing one timepoint, this should be set to NULL. If not, this should be an array of timepoints, e.g. c(12,36,48,60)
`TIMEPOINTSCALE`	Sets the scale of the timepoints being analysed, e.g. "Hours"
`check_done`	If multiple timepoints, whether the input has been checked
`current_time`	If multiple timepoints, the current timepoint being processed