API for spartan
Simulation Parameter Analysis R Toolkit ApplicatioN: Spartan

Global functions
aa_getATestResults Man page Source code
aa_graphATestsForSampleSize Man page Source code
aa_graphSampleSizeSummary Man page Source code
aa_sampleSizeSummary Man page Source code
aa_summariseReplicateRuns Man page Source code
analysenetwork_structures Man page Source code
atest Man page Source code
build_performance_statistics Man page Source code
calculate_fold_MSE Man page Source code
calculate_weights_for_ensemble_model Man page Source code
check_acceptable_model_type Man page Source code
check_file_extension Man page Source code
createAndEvaluateFolds Man page Source code
createTrainingFold Man page Source code
create_abc_settings_object Man page Source code
create_ensemble Man page Source code
create_neural_network Man page Source code
createtest_fold Man page Source code
denormalise_dataset Man page Source code
determine_optimal_neural_network_structure Man page Source code
efast_cvmethod Man page Source code
efast_generate_medians_for_all_parameter_subsets Man page Source code
efast_generate_sample Man page Source code
efast_generate_sample_netlogo Man page Source code
efast_get_overall_medians Man page Source code
efast_graph_Results Man page Source code
efast_netlogo_get_overall_medians Man page Source code
efast_netlogo_run_Analysis Man page Source code
efast_parameterdist Man page Source code
efast_process_netlogo_result Man page Source code
efast_run_Analysis Man page Source code
efast_sd Man page Source code
efast_setfreq Man page Source code
efast_ttest Man page Source code
emulate_efast_sampled_parameters Man page Source code
emulate_lhc_sampled_parameters Man page Source code
emulated_lhc_values Man page
emulation_algorithm_settings Man page Source code
emulator_parameter_evolution Man page Source code
emulator_predictions Man page Source code
ensemble_abc_wrapper Man page Source code
extract_predictions_from_result_list Man page Source code
generate_emulator_model Man page Source code
generate_emulators_and_ensemble Man page Source code
generate_ensemble_from_existing_emulations Man page Source code
generate_ensemble_training_set Man page Source code
generate_model_formula Man page Source code
generate_predictions_from_emulator Man page Source code
generate_requested_emulations Man page Source code
getMediansSubset Man page Source code
graph_Posteriors_All_Parameters Man page Source code
join_strings Man page Source code
join_strings_nospace Man page Source code
join_strings_space Man page Source code
kfoldCrossValidation Man page Source code
lhc_calculatePRCCForMultipleTimepoints Man page Source code
lhc_constructcoeff_dataset Man page Source code
lhc_countSignificantParametersOverTime Man page Source code
lhc_generateLHCSummary Man page Source code
lhc_generatePRCoEffs Man page Source code
lhc_generateTimepointFiles Man page Source code
lhc_generate_lhc_sample Man page Source code
lhc_generate_lhc_sample_netlogo Man page Source code
lhc_generate_netlogo_PRCoEffs Man page Source code
lhc_graphMeasuresForParameterChange Man page Source code
lhc_graphPRCCForMultipleTimepoints Man page Source code
lhc_netlogo_graphMeasuresForParameterChange Man page Source code
lhc_plotCoEfficients Man page Source code
lhc_polarplot Man page Source code
lhc_process_netlogo_result Man page Source code
lhc_process_sample_run_subsets Man page Source code
make_extension Man page Source code
make_filename Man page Source code
make_path Man page Source code
meanSquaredError Man page Source code
normaliseATest Man page Source code
normalise_dataset Man page Source code
nsga2_set_user_params Man page Source code
num.decimals Man page Source code
oat_countResponsesOfDesiredValue Man page Source code
oat_csv_result_file_analysis Man page Source code
oat_generate_netlogo_behaviour_space_XML Man page Source code
oat_graphATestsForSampleSize Man page Source code
oat_parameter_sampling Man page Source code
oat_plotResultDistribution Man page Source code
oat_processParamSubsets Man page Source code
oat_process_netlogo_result Man page Source code
partition_dataset Man page Source code
pcor.mat Man page Source code
pcor.rec Man page Source code
pcor.test Man page Source code
perform_aTest_for_all_sim_measures Man page Source code
plotATestsFromTimepointFiles Man page Source code
plotPRCCSFromTimepointFiles Man page Source code
plot_compare_sim_observed_to_model_prediction Man page Source code
ploteFASTSiFromTimepointFiles Man page Source code
prepare_parameter_value_list Man page Source code
produce_accuracy_plots_all_measures Man page Source code
produce_accuracy_plots_single_measure Man page Source code
rSquared Man page Source code
screen_nsga2_parameters Man page Source code
selectSuitableStructure Man page Source code
set.nsga_sensitivity_params Man page Source code
sim_data_for_emulation Man page
subset_results_by_param_value_set Source code
tutorial_consistency_set Man page
updateErrorForStructure Man page Source code
use_ensemble_to_generate_predictions Man page Source code
visualise_data_distribution Man page Source code
weight_emulator_predictions_by_ensemble Man page Source code
spartan documentation built on Sept. 6, 2017, 9:02 a.m.