| a_test_results |
Man page
|
| aa_getATestResults |
Man page
Source code
|
| aa_getATestResults_overTime |
Man page
Source code
|
| aa_graphATestsForSampleSize |
Man page
Source code
|
| aa_graphSampleSizeSummary |
Man page
Source code
|
| aa_sampleSizeSummary |
Man page
Source code
|
| aa_sampleSizeSummary_overTime |
Man page
Source code
|
| aa_summariseReplicateRuns |
Man page
Source code
|
| aa_summariseReplicateRuns_overTime |
Man page
Source code
|
| add_parameter_value_to_file |
Man page
Source code
|
| analysenetwork_structures |
Man page
Source code
|
| append_time_to_argument |
Man page
Source code
|
| atest |
Man page
Source code
|
| build_curve_results_from_r_object |
Man page
Source code
|
| build_performance_statistics |
Man page
Source code
|
| calculate_atest_score |
Man page
Source code
|
| calculate_fold_MSE |
Man page
Source code
|
| calculate_medians_for_all_measures |
Man page
Source code
|
| calculate_prcc_for_all_measures |
Man page
Source code
|
| calculate_prccs_all_parameters |
Man page
Source code
|
| calculate_weights_for_ensemble_model |
Man page
Source code
|
| check_acceptable_model_type |
Man page
Source code
|
| check_argument_positive_int |
Man page
Source code
|
| check_boolean |
Man page
Source code
|
| check_column_ranges |
Man page
Source code
|
| check_confidence_interval |
Man page
Source code
|
| check_consistency_result_type |
Man page
Source code
|
| check_data_partitions |
Source code
|
| check_double_value_in_range |
Man page
Source code
|
| check_file_exist |
Man page
Source code
|
| check_file_exists |
Man page
Source code
|
| check_file_extension |
Man page
Source code
|
| check_filepath_exists |
Man page
Source code
|
| check_function_dependent_paramvals |
Man page
Source code
|
| check_global_param_sampling_args |
Man page
Source code
|
| check_graph_output_type |
Man page
Source code
|
| check_input_args |
Man page
Source code
|
| check_lengths_parameters_ranges |
Man page
Source code
|
| check_lhs_algorithm |
Man page
Source code
|
| check_list_all_integers |
Man page
Source code
|
| check_nested_filepaths |
Man page
Source code
|
| check_netlogo_parameters_and_values |
Man page
Source code
|
| check_numeric_list_values |
Man page
Source code
|
| check_package_installed |
Man page
Source code
|
| check_parameters_and_ranges |
Man page
Source code
|
| check_paramvals_length_equals_parameter_length |
Man page
Source code
|
| check_ranges |
Source code
|
| check_robustness_parameter_and_ranges_lengths |
Man page
Source code
|
| check_robustness_paramvals_contains_baseline |
Man page
Source code
|
| check_robustness_range_contains_baseline |
Man page
Source code
|
| check_robustness_range_or_values |
Man page
Source code
|
| check_robustness_sampling_args |
Man page
Source code
|
| check_text |
Man page
Source code
|
| check_text_list |
Man page
Source code
|
| close_and_write_netlogo_file |
Man page
Source code
|
| compare_all_values_of_parameter_to_baseline |
Man page
Source code
|
| compare_result_sets_to_comparison_set |
Source code
|
| construct_result_filename |
Man page
Source code
|
| createAndEvaluateFolds |
Man page
Source code
|
| createTrainingFold |
Man page
Source code
|
| create_abc_settings_object |
Man page
Source code
|
| create_ensemble |
Man page
Source code
|
| create_neural_network |
Man page
Source code
|
| createtest_fold |
Man page
Source code
|
| dataset_precheck |
Man page
Source code
|
| denormalise_dataset |
Man page
Source code
|
| determine_optimal_neural_network_structure |
Man page
Source code
|
| efast_cvmethod |
Man page
Source code
|
| efast_generate_medians_for_all_parameter_subsets |
Man page
Source code
|
| efast_generate_medians_for_all_parameter_subsets_overTime |
Man page
Source code
|
| efast_generate_sample |
Man page
Source code
|
| efast_generate_sample_netlogo |
Man page
Source code
|
| efast_get_overall_medians |
Man page
Source code
|
| efast_get_overall_medians_overTime |
Man page
Source code
|
| efast_graph_Results |
Man page
Source code
|
| efast_netlogo_get_overall_medians |
Man page
Source code
|
| efast_netlogo_run_Analysis |
Man page
Source code
|
| efast_parameterdist |
Man page
Source code
|
| efast_process_netlogo_result |
Man page
Source code
|
| efast_run_Analysis |
Man page
Source code
|
| efast_run_Analysis_from_DB |
Man page
Source code
|
| efast_run_Analysis_overTime |
Man page
Source code
|
| efast_sd |
Man page
Source code
|
| efast_setfreq |
Man page
Source code
|
| efast_ttest |
Man page
Source code
|
| emulate_efast_sampled_parameters |
Man page
Source code
|
| emulate_lhc_sampled_parameters |
Man page
Source code
|
| emulated_lhc_values |
Man page
|
| emulation_algorithm_settings |
Man page
Source code
|
| emulator_parameter_evolution |
Man page
Source code
|
| emulator_predictions |
Man page
Source code
|
| ensemble_abc_wrapper |
Man page
Source code
|
| execute_checks |
Man page
Source code
|
| exemplar_sim_output |
Man page
|
| extract_predictions_from_result_list |
Man page
Source code
|
| format_efast_result_for_output |
Man page
Source code
|
| generate_a_test_results_header |
Man page
Source code
|
| generate_a_test_score |
Man page
Source code
|
| generate_efast_parameter_sets |
Man page
Source code
|
| generate_emulator_model |
Man page
Source code
|
| generate_emulators_and_ensemble |
Man page
Source code
|
| generate_ensemble_from_existing_emulations |
Man page
Source code
|
| generate_ensemble_training_set |
Man page
Source code
|
| generate_headers_for_atest_file |
Man page
Source code
|
| generate_list_of_checks |
Man page
Source code
|
| generate_medians_for_param_set |
Man page
Source code
|
| generate_model_formula |
Man page
Source code
|
| generate_parameter_table |
Man page
Source code
|
| generate_prcc_results_header |
Man page
Source code
|
| generate_predictions_from_emulator |
Man page
Source code
|
| generate_requested_emulations |
Man page
Source code
|
| generate_scores_for_all_sample_sizes |
Source code
|
| generate_sensitivity_indices |
Man page
Source code
|
| generate_summary_stats_for_all_param_sets |
Man page
Source code
|
| getMediansSubset |
Man page
Source code
|
| get_argument_correct_case |
Man page
Source code
|
| get_correct_file_path_for_function |
Man page
Source code
|
| get_file_and_object_argument_names |
Man page
Source code
|
| get_max_and_median_atest_scores |
Man page
Source code
|
| get_median_results_for_all_measures |
Man page
Source code
|
| get_medians_for_size_subsets |
Man page
Source code
|
| graph_Posteriors_All_Parameters |
Man page
Source code
|
| graph_sample_size_results |
Man page
Source code
|
| import_model_result |
Man page
Source code
|
| initialise_netlogo_xml_file |
Man page
Source code
|
| join_strings |
Man page
Source code
|
| join_strings_nospace |
Man page
Source code
|
| join_strings_space |
Man page
Source code
|
| kfoldCrossValidation |
Man page
Source code
|
| lhc_calculatePRCCForMultipleTimepoints |
Man page
Source code
|
| lhc_constructcoeff_dataset |
Man page
Source code
|
| lhc_generateLHCSummary |
Man page
Source code
|
| lhc_generateLHCSummary_overTime |
Man page
Source code
|
| lhc_generatePRCoEffs |
Man page
Source code
|
| lhc_generatePRCoEffs_db_link |
Man page
Source code
|
| lhc_generatePRCoEffs_overTime |
Man page
Source code
|
| lhc_generateTimepointFiles |
Man page
Source code
|
| lhc_generate_lhc_sample |
Man page
Source code
|
| lhc_generate_lhc_sample_netlogo |
Man page
Source code
|
| lhc_generate_netlogo_PRCoEffs |
Man page
Source code
|
| lhc_graphMeasuresForParameterChange |
Man page
Source code
|
| lhc_graphMeasuresForParameterChange_from_db |
Man page
Source code
|
| lhc_graphMeasuresForParameterChange_overTime |
Man page
Source code
|
| lhc_netlogo_graphMeasuresForParameterChange |
Man page
Source code
|
| lhc_plotCoEfficients |
Man page
Source code
|
| lhc_polarplot |
Man page
Source code
|
| lhc_process_netlogo_result |
Man page
Source code
|
| lhc_process_sample_run_subsets |
Man page
Source code
|
| lhc_process_sample_run_subsets_overTime |
Man page
Source code
|
| make_extension |
Man page
Source code
|
| make_filename |
Man page
Source code
|
| make_graph_title |
Man page
Source code
|
| make_lhc_plot |
Man page
Source code
|
| make_path |
Man page
Source code
|
| meanSquaredError |
Man page
Source code
|
| normaliseATest |
Man page
Source code
|
| normalise_dataset |
Man page
Source code
|
| nsga2_set_user_params |
Man page
Source code
|
| num.decimals |
Man page
Source code
|
| oat_csv_result_file_analysis |
Man page
Source code
|
| oat_csv_result_file_analysis_from_DB |
Man page
Source code
|
| oat_csv_result_file_analysis_overTime |
Man page
Source code
|
| oat_generate_netlogo_behaviour_space_XML |
Man page
Source code
|
| oat_graphATestsForSampleSize |
Man page
Source code
|
| oat_parameter_sampling |
Man page
Source code
|
| oat_plotResultDistribution |
Man page
Source code
|
| oat_processParamSubsets |
Man page
Source code
|
| oat_processParamSubsets_overTime |
Man page
Source code
|
| oat_process_netlogo_result |
Man page
Source code
|
| output_ggplot_graph |
Man page
Source code
|
| output_param_sets_per_curve |
Man page
Source code
|
| partition_dataset |
Man page
Source code
|
| pcor.mat |
Man page
|
| pcor.rec |
Man page
Source code
|
| pcor.test |
Man page
Source code
|
| perform_aTest_for_all_sim_measures |
Man page
Source code
|
| plotATestsFromTimepointFiles |
Man page
Source code
|
| plotPRCCSFromTimepointFiles |
Man page
Source code
|
| plot_compare_sim_observed_to_model_prediction |
Man page
Source code
|
| ploteFASTSiFromTimepointFiles |
Man page
Source code
|
| prepare_parameter_value_list |
Man page
Source code
|
| process_netlogo_parameter_range_info |
Man page
Source code
|
| process_parameter_value_if_exists |
Man page
Source code
|
| produce_accuracy_plots_all_measures |
Man page
Source code
|
| produce_accuracy_plots_single_measure |
Man page
Source code
|
| produce_atest_score_summary |
Man page
Source code
|
| produce_summary_for_all_values_of_parameter |
Man page
Source code
|
| rSquared |
Man page
Source code
|
| read_all_curve_results |
Man page
Source code
|
| read_from_csv |
Man page
Source code
|
| read_model_result_file |
Man page
Source code
|
| read_simulation_results |
Man page
Source code
|
| retrieve_results_for_comparison_result_set |
Man page
Source code
|
| sample_parameter_space |
Man page
Source code
|
| scale_lhc_sample |
Man page
Source code
|
| screen_nsga2_parameters |
Man page
Source code
|
| selectSuitableStructure |
Man page
Source code
|
| set.nsga_sensitivity_params |
Man page
Source code
|
| sim_data_for_emulation |
Man page
|
| subset_results_by_param_value_set |
Source code
|
| summarise_lhc_sweep_responses |
Man page
Source code
|
| summarise_replicate_runs |
Man page
Source code
|
| tutorial_consistency_set |
Man page
|
| updateErrorForStructure |
Man page
Source code
|
| use_ensemble_to_generate_predictions |
Man page
Source code
|
| visualise_data_distribution |
Man page
Source code
|
| weight_emulator_predictions_by_ensemble |
Man page
Source code
|
| write_data_to_csv |
Man page
Source code
|
