Files in spartan
Simulation Parameter Analysis R Toolkit ApplicatioN: Spartan

MD5
NAMESPACE
DESCRIPTION
man/efast_run_Analysis.Rd man/generate_ensemble_from_existing_emulations.Rd man/lhc_generate_lhc_sample.Rd man/oat_parameter_sampling.Rd man/generate_emulators_and_ensemble.Rd man/lhc_netlogo_graphMeasuresForParameterChange.Rd man/aa_sampleSizeSummary.Rd man/make_path.Rd man/generate_requested_emulations.Rd man/weight_emulator_predictions_by_ensemble.Rd man/oat_csv_result_file_analysis.Rd man/efast_process_netlogo_result.Rd man/plot_compare_sim_observed_to_model_prediction.Rd man/oat_generate_netlogo_behaviour_space_XML.Rd man/join_strings_nospace.Rd man/build_performance_statistics.Rd man/produce_accuracy_plots_all_measures.Rd man/nsga2_set_user_params.Rd man/lhc_generateTimepointFiles.Rd man/normalise_dataset.Rd man/create_neural_network.Rd man/check_acceptable_model_type.Rd man/create_abc_settings_object.Rd man/generate_model_formula.Rd man/efast_netlogo_get_overall_medians.Rd man/lhc_graphPRCCForMultipleTimepoints.Rd man/efast_generate_sample_netlogo.Rd man/analysenetwork_structures.Rd man/efast_generate_medians_for_all_parameter_subsets.Rd man/generate_emulator_model.Rd man/efast_setfreq.Rd man/efast_sd.Rd man/oat_processParamSubsets.Rd man/normaliseATest.Rd man/emulate_efast_sampled_parameters.Rd man/oat_countResponsesOfDesiredValue.Rd man/lhc_plotCoEfficients.Rd man/denormalise_dataset.Rd man/produce_accuracy_plots_single_measure.Rd man/graph_Posteriors_All_Parameters.Rd man/generate_ensemble_training_set.Rd man/oat_process_netlogo_result.Rd man/ploteFASTSiFromTimepointFiles.Rd man/lhc_process_netlogo_result.Rd man/emulate_lhc_sampled_parameters.Rd man/set.nsga_sensitivity_params.Rd man/generate_predictions_from_emulator.Rd man/updateErrorForStructure.Rd man/lhc_countSignificantParametersOverTime.Rd man/efast_netlogo_run_Analysis.Rd man/lhc_graphMeasuresForParameterChange.Rd man/make_extension.Rd man/efast_generate_sample.Rd man/efast_graph_Results.Rd man/partition_dataset.Rd man/aa_graphSampleSizeSummary.Rd man/pcor.rec.Rd man/sim_data_for_emulation.Rd man/lhc_generateLHCSummary.Rd man/kfoldCrossValidation.Rd man/determine_optimal_neural_network_structure.Rd man/plotPRCCSFromTimepointFiles.Rd man/create_ensemble.Rd man/aa_summariseReplicateRuns.Rd man/lhc_generate_netlogo_PRCoEffs.Rd man/pcor.mat.Rd man/efast_ttest.Rd man/createTrainingFold.Rd man/plotATestsFromTimepointFiles.Rd man/screen_nsga2_parameters.Rd man/emulation_algorithm_settings.Rd man/efast_get_overall_medians.Rd man/lhc_polarplot.Rd man/calculate_fold_MSE.Rd man/pcor.test.Rd man/extract_predictions_from_result_list.Rd man/lhc_generate_lhc_sample_netlogo.Rd man/num.decimals.Rd man/lhc_process_sample_run_subsets.Rd man/createAndEvaluateFolds.Rd man/emulator_parameter_evolution.Rd man/use_ensemble_to_generate_predictions.Rd man/aa_getATestResults.Rd man/createtest_fold.Rd man/efast_cvmethod.Rd man/lhc_calculatePRCCForMultipleTimepoints.Rd man/perform_aTest_for_all_sim_measures.Rd man/selectSuitableStructure.Rd man/oat_plotResultDistribution.Rd man/meanSquaredError.Rd man/lhc_generatePRCoEffs.Rd man/getMediansSubset.Rd man/ensemble_abc_wrapper.Rd man/calculate_weights_for_ensemble_model.Rd man/efast_parameterdist.Rd man/check_file_extension.Rd man/rSquared.Rd man/visualise_data_distribution.Rd man/join_strings_space.Rd man/oat_graphATestsForSampleSize.Rd man/lhc_constructcoeff_dataset.Rd man/make_filename.Rd man/tutorial_consistency_set.Rd man/emulated_lhc_values.Rd man/emulator_predictions.Rd man/aa_graphATestsForSampleSize.Rd man/prepare_parameter_value_list.Rd man/atest.Rd man/join_strings.Rd
data/sim_data_for_emulation.rda
data/emulated_lhc_values.rda
data/tutorial_consistency_set.rda
build/vignette.rds
inst/doc/sensitivity_analysis.Rmd inst/doc/sensitivity_analysis.R inst/doc/emulation_ensembles.Rmd inst/doc/netlogo.R inst/doc/emulation_ensembles.R
inst/doc/netlogo.html
inst/doc/netlogo.Rmd
inst/doc/emulation_ensembles.html
inst/doc/sensitivity_analysis.html
R/emulation_sensitivity_analysis.R R/robustness_analysis.R R/robustness_sampling.R R/efast_analysis.R R/efast_sampling.R R/efast_sampling_netlogo.R R/aleatory_analysis.R R/robustness_utilities.R R/emulation_plotting.R R/atest_utilities.R R/emulation_evolution.R R/ensemble_generation.R R/robustness_plotting.R R/ensemble_utilities.R R/efast_plotting.R R/lhc_analysis_netlogo.R R/efast_utilities.R R/aleatory_analysis_plotting.R R/emulation_generation.R R/emulation_utilities.R R/lhc_analysis.R R/lhc_sampling.R R/lhc_preprocess.R R/neural_network_utilities.R R/datadoc.R R/abc_utilities.R R/efast_analysis_netlogo.R R/lhc_prcc_utilities.R R/spartan_utilities.R R/lhc_plotting.R R/robustness_analysis_netlogo.R R/lhc_sampling_netlogo.R
vignettes/Figure1.png
vignettes/netlogo.Rmd vignettes/emulation_ensembles.Rmd
vignettes/Figure4.png
vignettes/Figure3.png
vignettes/Figure2.png
vignettes/sensitivity_analysis.Rmd
spartan documentation built on Sept. 6, 2017, 9:02 a.m.