Description Usage Arguments Value
View source: R/ensemble_utilities.R
Internal function to create the ensemble
1 2 3 4 | create_ensemble(ensemble_emulations, all_emulator_predictions,
emulator_test_data, measures, emulator_types, pre_normed_mins,
pre_normed_maxes, algorithm_settings = NULL, normalise = FALSE,
timepoint = NULL, output_formats = c("pdf"))
|
ensemble_emulations |
All emulations to build into the ensemble |
all_emulator_predictions |
Test set predictions from all emulators, on which the ensemble will be trained / emulators weighted |
emulator_test_data |
Data on which the ensemble performance will be assessed |
measures |
Simulation responses the model should predict |
emulator_types |
Machine learning techniques being employed |
pre_normed_mins |
The minimum values of each parameter prior to data normalisation. Used to rescale the results |
pre_normed_maxes |
The maximum values of each parameter prior to data normalisation. Used to rescale the results |
algorithm_settings |
Object output from the function emulation_algorithm_settings, containing the settings of the machine learning algorithms to use in emulation creation. Used here to obtain settings relevant to ensemble creation - namely number of generations and whether the ensemble should be saved to file, as well as whether plots should be produced showing ensemble performance. |
normalise |
Whether the predictions generated when testing the ensemble should be normalised for presenting test results |
timepoint |
Simulation timepoint for which an ensemble is being created |
output_formats |
File formats in which result graphs should be produced |
Generated ensemble object
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