spatstat.geom-internal | R Documentation |
Internal spatstat.geom functions.
## S3 method for class 'diagramobj' x[...] ## S3 method for class 'pp3' x[i, drop, ...] ## S3 method for class 'splitppx' x[...] ## S3 replacement method for class 'splitppx' x[...] <- value acedist.show(X, Y, n, d, timelag) acedist.noshow(X, Y, n, d) affinexy(X, mat, vec, invert) affinexypolygon(p, mat, vec, detmat) allElementsIdentical(x, entry) anycrossing.psp(A,B) applytolayers(L, FUN, ...) applyPolyclipArgs(x, p) areaGain.diri(u, X, r, ..., W, verbose) areaGain.grid(u, X, r, ..., W, ngrid) areaLoss.diri(X, r, ..., W, subset) areaLoss.grid(X, r, ..., W, subset, method = c("count", "distmap"), ngrid = spatstat.options("ngrid.disc"), exact = FALSE) areaLoss.poly(X, r, ..., W, subset, splitem) AsymmDistance.psp(X, Y, metric, method) as.breakpts(...) ## S3 method for class 'unitname' as.character(x, ...) ## S3 method for class 'im' as.double(x, ...) as.imlist(x, check) as.linimlist(x, check) ## S3 method for class 'hyperframe' as.list(x, ...) as.listof(x) as.ppplist(x, check) as.unitname(s) avenndist(X) bbEngine(...) bdry.mask(W) bounding.box3(...) break.holes(x, splitby, depth, maxdepth) breakpts(val, maxi, even = FALSE, npos = NULL, step = NULL) breakpts.from.r(r) cartesian(pp, markset, fac = TRUE) cellmiddles(W, nx, ny, npix, distances) checkbigmatrix(n, m, fatal, silent) checkfields(X,L) check.arc(arc, fatal) check.finespacing(r, eps, win, rmaxdefault, context, action, rname) check.hist.lengths(hist,breaks) circunion(arcs) clip.psp(x, window, check, fragments) cliprect.psp(x, window, fragments) clippoly.psp(s, window, fragments) closethresh(X,R,S,twice,...) cocoEngine(nv, ie, je, algoname) coerce.marks.numeric(X, warn) crosspairquad(Q,rmax,what) cobble.xy(x, y, f, fatal, ...) codetime(x, hms, what) col.args.to.grey(x, ...) commonPolyclipArgs(..., p) conform.imagelist(X, Zlist) countingweights(id, areas, check = TRUE) default.n.tiling(X, nd, ntile, npix, eps, random, quasi, verbose) default.ntile(X) ## S3 method for class 'hyperframe' dimnames(x) ## S3 replacement method for class 'hyperframe' dimnames(x) <- value dflt.redraw(button, name, env) diagramobj(X, ...) ## S3 method for class 'hyperframe' dim(x) ## S3 method for class 'im' dim(x) ## S3 method for class 'owin' dim(x) dist2dpath(dist, method="C") do.as.im(x, action, ..., W, eps, dimyx, xy, na.replace) do.call.plotfun(fun, arglist, ..., envir) drawSignedPoly(x,y,pars,sgn) emptywindow(w) equalpairs.quad(Q) equals.quad(Q) equalsfun.quad(Q) erodemask(w,r,strict) even.breaks.owin(w) exactdt(X, ...) exactPdt(w) existsSpatstatVariable(name) expandSpecialLists(x, special) fakemaintitle(bb, main, ...) fft2D(z, inverse, west) fftwAvailable() fillNA(x, value) flipxypolygon(p) ## S3 method for class 'numberwithunit' format(x, ..., collapse, modifier) framebottomleft(w) gammabreaks(ra, n, gamma) genericNNdistBy(X, by, k) getfields(X, L, fatal = TRUE) getlastshift(X) getSpatstatVariable(name) gridindex(x, y, xrange, yrange, nx, ny) grid1index(x, xrange, nx) grow.mask(M, xmargin=0, ymargin=xmargin) handle.r.b.args(r = NULL, breaks = NULL, window, pixeps = NULL, rmaxdefault) ## S3 method for class 'hyperframe' head(x,n,...) hsvNA(h, s, v, alpha) IdenticalRowPair(i,j,a,b) IdenticalRows(i,j,a,b) idorempty(w, r, caller) imageOp(e1, e2, op) imagelistOp(e1, e2, op) inpoint(W) inside.arc(theta, arc) interpretAsOrigin(x, W) intX.owin(w) intX.xypolygon(polly) intY.owin(w) intY.xypolygon(polly) invokeColourmapRule(colfun, x, ..., zlim, colargs) is.col.argname(x) is.data(Q) is.fv(x) is.hyperframe(x) is.imlist(x) is.infline(x) ## Default S3 method: is.marked(...) ## S3 method for class 'psp' is.marked(X, ...) ## S3 method for class 'quad' is.marked(X, na.action="warn", ...) ## Default S3 method: is.multitype(X, ...) ## S3 method for class 'quad' is.multitype(X, na.action="warn", ...) is.ppplist(x) is.pp3(x) is.ppx(x) is.psp(x) is.quad(x) is.solist(x) is.sob(x) is.tess(x) is.vanilla(u) ## S3 method for class 'im' levels(x) ## S3 replacement method for class 'im' levels(x) <- value levelsAsFactor(x) listof(...) logi.dummy(X, dummytype, nd, mark.repeat, ...) markvaluetype(x) packupNNdata(NND, NNW, what, k) parbreak(terse) perspVisible(x, y, z, M) plan.legend.layout(B, ..., side, sep, size, sep.frac, size.frac, started, map) pointweights(X, ..., weights, parent) polytileareaEngine(P, xrange, yrange, nx, ny, DivideByPixelArea) putSpatstatVariable(name, value) lookup.im(Z, x, y, naok, strict) majorminorversion(v) make.even.breaks(bmax, npos, bstep) makeunitname(sing, plur, mul) markappend(...) markcbind(...) markformat(x) ## S3 method for class 'ppp' markformat(x) ## S3 method for class 'ppx' markformat(x) ## S3 method for class 'psp' markformat(x) ## Default S3 method: markformat(x) mark.scale.default(marx, w, ..., markscale, maxsize, meansize, characters) markspace.integral(X) ## Default S3 method: marks(x, ...) ## S3 method for class 'quad' marks(x, dfok=FALSE, ...) markappendop(x, y) x %mapp% y marksubset(x, index, format) marksubsetop(x, i) x %msub% i markreplicateop(x, n) x %mrep% n mask2df(w) maxflow(costm) meanX.owin(w) meanY.owin(w) MinimalTess(W, ...) multiplicityNumeric(x) multiply.only.finite.entries(x, a) na.handle.im(X, na.replace) ## S3 method for class 'hyperframe' names(x) ## S3 replacement method for class 'hyperframe' names(x) <- value nearest.pixel(x, y, Z) nearest.valid.pixel(x, y, Z, method, nsearch) n.quad(Q) numberwithunit(x, u) numeric.columns(M, logical, others) onecolumn(m) owinpolycheck(W, verbose=TRUE) owinpoly2mask(w, rasta, check=TRUE) owin2polypath(w) param.quad(Q) PDtoNN(d, what, k, ...) pickoption(what="option", key, keymap, ..., exact=FALSE, list.on.err=TRUE, die=TRUE, multi=FALSE, allow.all=TRUE) plotEachLayer(x, ..., main, plotargs, add, show.all, do.plot) plot3Dpoints(xyz, eye, org, ..., type, xlim, ylim, zlim, add, box, main, cex, box.back, box.front) plotPolygonBdry(x, ...) plotWidthMap(bb.leg, zlim, phys.scale, leg.scale, leg.side, leg.args, grafpar) ## S3 method for class 'barplotdata' plot(x, ...) ## S3 method for class 'indicfun' plot(x, W, ..., main) ppllengine(X, Y, action="project", check=FALSE) pppdist.mat(X, Y, cutoff = 1, q = 1, matching = TRUE, precision = 9, approximation = 10) pppdist.prohorov(X, Y, n, dfix, type, cutoff, matching, ccode, auction, precision, approximation) ppsubset(X, I, Iname, fatal) prepareTitle(main) ## S3 method for class 'anylist' print(x, ...) ## S3 method for class 'colourmap' print(x, ...) ## S3 method for class 'distfun' print(x, ...) ## S3 method for class 'ewcdf' print(x, digits, ...) ## S3 method for class 'funxy' print(x, ...) ## S3 method for class 'hyperframe' print(x, ...) ## S3 method for class 'indicfun' print(x, ...) ## S3 method for class 'layered' print(x, ...) ## S3 method for class 'lut' print(x, ...) ## S3 method for class 'metric' print(x, ...) ## S3 method for class 'metricfun' print(x, ...) ## S3 method for class 'nnfun' print(x, ...) ## S3 method for class 'numberwithunit' print(x, ...) ## S3 method for class 'onearrow' print(x, ...) ## S3 method for class 'pppmatching' print(x, ...) ## S3 method for class 'simplepanel' print(x, ...) ## S3 method for class 'solist' print(x, ...) ## S3 method for class 'splitppp' print(x, ...) ## S3 method for class 'splitppx' print(x, ...) ## S3 method for class 'summary.distfun' print(x, ...) ## S3 method for class 'summary.funxy' print(x, ...) ## S3 method for class 'summary.hyperframe' print(x, ...) ## S3 method for class 'summary.listof' print(x, ...) ## S3 method for class 'summary.logiquad' print(x, ..., dp=3) ## S3 method for class 'summary.lut' print(x, ...) ## S3 method for class 'summary.owin' print(x, ...) ## S3 method for class 'summary.ppp' print(x, ..., dp) ## S3 method for class 'summary.psp' print(x, ...) ## S3 method for class 'summary.splitppp' print(x, ...) ## S3 method for class 'summary.solist' print(x, ...) ## S3 method for class 'summary.splitppx' print(x, ...) ## S3 method for class 'summary.unitname' print(x, ...) ## S3 method for class 'symbolmap' print(x, ...) ## S3 method for class 'textstring' print(x, ...) ## S3 method for class 'texturemap' print(x, ...) ## S3 method for class 'tess' print(x, ..., brief=FALSE) ## S3 method for class 'timed' print(x, ...) ## S3 method for class 'yardstick' print(x, ...) project3Dhom(xyz, eye, org, vert) putlastshift(X, vec) qtPrepareCoordinate(covname, W, origin) quad(data, dummy, w, param) rasterfilter(X, f) recognise.spatstat.type(x) rectquadrat.breaks(xr, yr, nx = 5, ny = nx, xbreaks = NULL, ybreaks = NULL) rectquadrat.countEngine(x, y, xbreaks, ybreaks, weights) repair.image.xycoords(x) resolve.stringsAsFactors(stringsAsFactors) rgbNA(red, green, blue, alpha, maxColorValue) ruletextline(ch, n, terse) quadscheme.replicated(data, dummy, method, ...) quadscheme.spatial(data, dummy, method, ...) pointgrid(W, ngrid) rastersample(X, Y) rasterx.mask(w, drop) rastery.mask(w, drop) rasterxy.mask(w, drop) rasterx.im(x) rastery.im(x) rasterxy.im(x, drop) rebound(x, rect) ## S3 method for class 'im' rebound(x, rect) ## S3 method for class 'ppp' rebound(x, rect) ## S3 method for class 'psp' rebound(x, rect) ## S3 method for class 'owin' rebound(x, rect) repair.old.factor.image(x) restrict.mask(M, W) reversePolyclipArgs(x, p) rotxy(X, angle = pi/2) rotxypolygon(p, angle = pi/2) ## S3 method for class 'hyperframe' row.names(x) ## S3 replacement method for class 'hyperframe' row.names(x) <- value safedeldir(X) safelookup(Z, x, factor, warn) ## S3 method for class 'breakpts' scalardilate(X, f, ...) ## S3 method for class 'diagramobj' scalardilate(X, f, ...) ## S3 method for class 'diagramobj' shift(X, ...) ## S3 method for class 'quadratcount' shift(X, ...) shiftxy(X, vec = c(0, 0)) shiftxypolygon(p, vec = c(0, 0)) simulationresult(resultlist, nsim, drop, NameBase) smudge(X) ## S3 method for class 'im' sort(x, ...) spatstatDiagnostic(msg) spatstat.deldir.setopt(use.trigrafS, use.trigraf, debug.delaunay) spatstat.xy.coords(x, y) store.versionstring.spatstat() ## S3 method for class 'hyperframe' str(object, ...) ## S3 method for class 'hyperframe' summary(object, ..., brief=FALSE) ## S3 method for class 'logiquad' summary(object, ..., checkdup=FALSE) ## S3 method for class 'lut' summary(object, ...) ## S3 method for class 'metric' summary(object, ...) ## S3 method for class 'pppmatching' summary(object, ...) ## S3 method for class 'ppx' summary(object, ...) ## S3 method for class 'splitppx' summary(object, ...) superimposeMarks(arglist, nobj) symbolmapdomain(x) symbolmaptype(x) ## S3 method for class 'hyperframe' tail(x,n,...) thickSegments(x, widths, ..., add, main, do.plot, show.all, show.window, scale, adjust, negative.args, legend, leg.side, leg.sep, leg.wid, leg.args, leg.scale, zlim, box) tilecentroids(W, nx, ny) trianglediameters(iedge, jedge, edgelength, ..., nvert, dmax, check) trim.mask(M, R, tolerant) tweak.closepairs(cl, rmax, i, deltax, deltay, deltaz) x %unit% u ## Default S3 method: unitname(x) ## Default S3 replacement method: unitname(x) <- value unstackFilter(x) ## S3 method for class 'im' update(object, ...) validradius(r, caller) validate.mask(w, fatal=TRUE) validate.quad(Q, fatal, repair, announce) versioncurrency.spatstat(today, checkR) versionstring.spatstat() veryunique(z) verifyclass(X, C, N = deparse(substitute(X)), fatal = TRUE) warn.once(key, ...) warn.no.metric.support(caller, ..., metric) warn.unsupported.args(unsup, ...) waxlyrical(type, terse) wrangle2image(values, template) w.quad(Q) x.quad(Q) y.quad(Q) xy.grid(xr, yr, nx, ny, dx, dy) ## S3 method for class 'im' xtfrm(x) xypolyselfint(p, eps, proper, yesorno, checkinternal) XDtoNN(d, what, iX, iY, k, ...) xypolygon2psp(p, w, check) ZeroValue(x) ## S3 method for class 'im' ZeroValue(x)
These internal spatstat.geom functions should not be called directly by the user. Their names and capabilities may change without warning from one version of spatstat.geom to the next.
The return values of these functions are not documented, and may change without warning.
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