densityQuick.lpp: Kernel Estimation of Intensity on a Network using a 2D Kernel

In spatstat.linnet: Linear Networks Functionality of the 'spatstat' Family

Kernel Estimation of Intensity on a Network using a 2D Kernel

Description

Estimates the intensity of a point process on a linear network using a two-dimensional smoothing kernel.

Usage

densityQuick.lpp(x, sigma=NULL, ...,
         kernel="gaussian",
         at = c("pixels", "points"),
         what = c("estimate", "se", "var"),
         leaveoneout = TRUE,
         diggle = FALSE,
         edge2D = FALSE,
         weights = NULL,
         positive = FALSE)

Arguments

x	Point pattern on a linear network (object of class "lpp").
sigma	Smoothing bandwidth. A single numeric value, in the same units as the coordinates of x. Alternatively sigma may be a function which selects a bandwidth when applied to x, for example, bw.scott.iso or bw.lppl. There is a sensible default.
...	Additional arguments passed to as.mask to determine the pixel resolution, or arguments passed to sigma if it is a function.
kernel	String (partially matched) specifying the smoothing kernel. Current options are "gaussian", "epanechnikov", "quartic" or "disc".
at	String (partially matched) specifying whether to compute the intensity values at a fine grid of locations on the network (at="pixels", the default) or only at the points of x (at="points").
what	String (partially matched) specifying whether to calculate the intensity estimate, or its estimated standard error, or its estimated variance.
leaveoneout	Logical value indicating whether to compute a leave-one-out estimator. Applicable only when at="points".
diggle	Logical value specifying whether to use the ‘Diggle’ correction.
edge2D	Logical value specifying whether to apply the usual two-dimensional edge correction procedure to the numerator and denominator of the estimate.
weights	Optional weights to be attached to the points. A numeric vector, an expression, or a pixel image.
positive	Logical value indicating whether to force the resulting values to be positive. Default is FALSE for the sake of speed.

Details

Kernel smoothing is applied to the points of x using a two-dimensional Gaussian kernel, as described in Rakshit et al (2019). The result is a pixel image on the linear network (class "linim") which can be plotted.

Other techniques for kernel smoothing on a network are implemented in density.lpp. The main advantages of using a two-dimensional kernel are very fast computation and insensitivity to changes in the network geometry. The main disadvantage is that it ignores the connectivity of the network. See Rakshit et al (2019) for further explanation.

The argument sigma specifies the smoothing bandwidth. If sigma is missing or NULL, the default is one-eighth of the length of the shortest side of the bounding box of x. If sigma is a function in the R language, it is assumed to be a bandwidth selection rule, and it will be applied to x to compute the bandwidth value.

Value

If at="pixels" (the default), a pixel image on the linear network (object of class "linim").

If at="points", a numeric vector with one entry for each point of x.

Infinite bandwidth

If sigma=Inf, the resulting density estimate is constant over all locations, and is equal to the average density of points per unit length. (If the network is not connected, then this rule is applied separately to each connected component of the network).

Author(s)

Adrian Baddeley, Suman Rakshit and Tilman Davies

References

Rakshit, S., Davies, T., Moradi, M., McSwiggan, G., Nair, G., Mateu, J. and Baddeley, A. (2019) Fast kernel smoothing of point patterns on a large network using 2D convolution. International Statistical Review 87 (3) 531–556. DOI: 10.1111/insr.12327.

See Also

density.lpp, the main function for density estimation on a network.

bw.scott, bw.scott.iso, bw.lpplfor bandwidth selection.

Examples

   X <- unmark(chicago)
   plot(densityQuick.lpp(X, 500))
   plot(densityQuick.lpp(X, 500, diggle=TRUE))
   plot(densityQuick.lpp(X, bw.scott.iso))
   plot(densityQuick.lpp(X, 500, what="se"))

spatstat.linnet documentation built on May 29, 2024, 4:07 a.m.