allocate | allocate function |
alpha | alpha function |
B | B function |
basehazard | basehazard function |
basehazard.basehazardspec | basehazard.basehazardspec function |
baseHazST | baseHazST function |
baselinehazard | baselinehazard function |
baselinehazard_multiWay | baselinehazard_multiWay function |
betapriorGauss | betapriorGauss function |
blockDiag | A function to |
boxplotRisk | boxplotRisk function |
Bspline.construct | Bspline.construct function |
BsplineHaz | BsplineHaz function |
checkSurvivalData | checkSurvivalData function |
circulant | circulant function |
circulantij | circulantij function |
circulant.matrix | circulant.matrix function |
circulant.numeric | circulant.numeric function |
covmodel | covmodel function |
CSplot | CSplot function |
cumbasehazard | cumbasehazard function |
cumbasehazard.basehazardspec | cumbasehazard.basehazardspec function |
cumulativeBspline.construct | cumulativeBspline.construct function |
density_PP | density_PP function |
densityquantile | densityquantile function |
densityquantile.basehazardspec | densityquantile.basehazardspec function |
densityquantile_PP | densityquantile_PP function |
derivindepGaussianprior | derivindepGaussianprior function |
derivindepGaussianpriorST | derivindepGaussianpriorST function |
derivpsplineprior | derivpsplineprior function |
distinfo | distinfo function |
distinfo.basehazardspec | distinfo.basehazardspec function |
dot-onAttach | .onAttach function |
estimateY | estimateY function |
etapriorGauss | etapriorGauss function |
Et_PP | Et_PP function |
EvalCov | EvalCov function |
ExponentialCovFct | ExponentialCovFct function |
exponentialHaz | exponentialHaz function |
FFTgrid | FFTgrid function |
fixedpars | fixedpars function |
fixmatrix | fixmatrix function |
fixParHaz | fixParHaz function |
frailtylag1 | frailtylag1 function |
fs | London Fire Brigade property |
fstimes | London Fire Brigade response times to dwelling fires, 2009 |
gamma2risk | gamma2risk function |
GammafromY | GammafromY function |
GammaFromY_SPDE | GammaFromY_SPDE function |
gencens | gencens function |
getbb | getbb function |
getBbasis | getBbasis function |
getcov | getcov function |
getgrd | getgrd function |
getGrid | getGrid function |
getleneta | getleneta function |
getOptCellwidth | getOptCellwidth function |
getparranges | getparranges function |
getsurvdata | getsurvdata function |
gompertzHaz | gompertzHaz function |
gradbasehazard | gradbasehazard function |
gradbasehazard.basehazardspec | gradbasehazard.basehazardspec function |
gradcumbasehazard | gradcumbasehazard function |
gradcumbasehazard.basehazardspec | gradcumbasehazard.basehazardspec function |
grid2spdf | grid2spdf function |
grid2spix | grid2spix function |
grid2spts | grid2spts function |
gridY | gridY function |
gridY_polygonal | gridY_polygonal function |
guess_t | guess_t function |
hasNext | generic hasNext method |
hasNext.iter | hasNext.iter function |
hazardexceedance | hazardexceedance function |
hazardpars | hazardpars function |
hazard_PP | hazard_PP function |
hessbasehazard | hessbasehazard function |
hessbasehazard.basehazardspec | hessbasehazard.basehazardspec function |
hesscumbasehazard | hesscumbasehazard function |
hesscumbasehazard.basehazardspec | hesscumbasehazard.basehazardspec function |
imputationModel | imputationModel function |
Independent | Independent function |
indepGaussianprior | indepGaussianprior function |
indepGaussianpriorST | indepGaussianpriorST function |
inference.control | inference.control function |
insert | insert function |
invtransformweibull | invtransformweibull function |
is.burnin | is this a burn-in iteration? |
is.retain | do we retain this iteration? |
iteration | iteration number |
logPosterior | logPosterior function |
logPosterior_gridded | logPosterior_gridded function |
logPosterior_polygonal | logPosterior_polygonal function |
logPosterior_SPDE | logPosterior_SPDE function |
loop.mcmc | loop over an iterator |
makehamHaz | makehamHaz function |
maxlikparamPHsurv | maxlikparamPHsurv function |
MCE | MCE function |
mcmcLoop | iterator for MCMC loops |
mcmcpars | mcmcpars function |
mcmcPriors | mcmcPriors function |
mcmcProgressNone | null progress monitor |
mcmcProgressPrint | printing progress monitor |
mcmcProgressTextBar | text bar progress monitor |
midpts | midpts function |
multiWayHaz | multiWayHaz function |
neighLocs | neighLocs function |
neighOrder | neighOrder function |
nextStep | next step of an MCMC chain |
NonSpatialLogLikelihood_or_gradient | NonSpatialLogLikelihood_or_gradient function |
omegapriorGauss | omegapriorGauss function |
omegapriorGaussST | omegapriorGaussST function |
optifix | optifix function |
plot.FFTgrid | plot.FFTgrid function |
plotsurv | plotsurv function |
polyadd | polyadd function |
polymult | polymult function |
posteriorcov | posteriorcov function |
predict.mcmcspatsurv | predict.mcmcspatsurv function |
print.mcmc | print.mcmc function |
print.mcmcspatsurv | print.mcmcspatsurv function |
print.mlspatsurv | print.mlspatsurv function |
print.textSummary | print.textSummary function |
priorposterior | priorposterior function |
proposalVariance | proposalVariance function |
proposalVariance_gridded | proposalVariance_gridded function |
proposalVariance_polygonal | proposalVariance_polygonal function |
proposalVariance_SPDE | proposalVariance_SPDE function |
PsplineHaz | PsplineHaz function |
psplineprior | psplineprior function |
psplineRWprior | psplineRWprior function |
QuadApprox | QuadApprox function |
quantile.mcmcspatsurv | quantile.mcmcspatsurv function |
quantile.mlspatsurv | quantile.mlspatsurv function |
randompars | randompars function |
reconstruct.bs | reconstruct.bs function |
reconstruct.bs.coxph | reconstruct.bs.coxph function |
reconstruct.bs.mcmcspatsurv | reconstruct.bs.mcmcspatsurv function |
resetLoop | reset iterator |
residuals.mcmcspatsurv | resuiduals.mcmcspatsurv function |
rootWeibullHaz | rootWeibullHaz function |
setTxtProgressBar2 | set the progress bar |
setupHazard | setupHazard function |
setupPrecMatStruct | setupPrecMatStruct function |
showGrid | showGrid function |
simsurv | simsurv function |
spatialpars | spatialpars function |
spatsurv-package | spatsurv |
spatsurvVignette | spatsurvVignette function |
SPDE | SPDE function |
SPDEprec | SPDEprec function |
SpikedExponentialCovFct | SpikedExponentialCovFct function |
Summarise | Summarise function |
summary.mcmc | summary.mcmc function |
summary.mcmcspatsurv | summary.mcmcspatsurv function |
surv3d | Spatial Survival Plot in 3D |
survival_PP | survival_PP function |
survspat | survspat function |
survspatNS | survspatNS function |
textSummary | textSummary function |
timevaryingPL | timevaryingPL function |
tpowHaz | tpowHaz function |
transformweibull | transformweibull function |
TwoWayHazAdditive | TwoWayHazAdditive function |
txtProgressBar2 | A text progress bar with label |
vcov.mcmcspatsurv | vcov.mcmcspatsurv function |
vcov.mlspatsurv | vcov.mlspatsurv function |
weibullHaz | weibullHaz function |
YfromGamma | YfromGamma function |
YFromGamma_SPDE | YFromGamma_SPDE function |
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