speciesgeocodeR: Prepare Species Distributions for the Use in Phylogenetic Analyses

Preparation of species occurrences and distribution data for the use in phylogenetic analyses. SpeciesgeocodeR is built for data cleaning, data exploration and data analysis and especially suited for biogeographical and ecological questions on large datasets. The package includes the easy creation of summary-tables and -graphs and geographical maps, the automatic cleaning of geographic occurrence data, the calculating of coexistence matrices and species ranges (EOO) as well as mapping diversity in geographic areas.

AuthorAlexander Zizka [aut, cre]
Date of publication2015-10-18 01:20:59
MaintainerAlexander Zizka <alexander.zizka@bioenv.gu.se>
LicenseGPL-3
Version1.0-4

View on CRAN

Functions

CalcRange Man page
CoExClass Man page
countryref Man page
GeoClean Man page
GetElevation Man page
lemurs Man page
lemurs_in Man page
lemurs_test Man page
MapGrid Man page
MapRichness Man page
mdg_biomes Man page
mdg_poly Man page
PlotHull Man page
plot.spgeoIN Man page
plot.spgeoOUT Man page
RangeRichness Man page
ReadPoints Man page
RichnessGrid Man page
speciesgeocodeR Man page
SpeciesGeoCoder Man page
speciesgeocodeR-package Man page
Spgc2BioGeoBEARS Man page
SpGeoCod Man page
SpGeoCodH Man page
summary.spgeoIN Man page
summary.spgeoOUT Man page
WriteOut Man page
WwfLoad Man page

Files

speciesgeocodeR
speciesgeocodeR/inst
speciesgeocodeR/inst/extdata
speciesgeocodeR/inst/extdata/mdg_biomes_simple.shx
speciesgeocodeR/inst/extdata/mdg_biomes_simple.dbf
speciesgeocodeR/inst/extdata/mdg_biomes_simple.txt
speciesgeocodeR/inst/extdata/mdg_biomes_simple.qpj
speciesgeocodeR/inst/extdata/lemur_test.txt
speciesgeocodeR/inst/extdata/lemurs.txt
speciesgeocodeR/inst/extdata/mdg_biomes_simple.prj
speciesgeocodeR/inst/extdata/mdg_biomes_simple.shp
speciesgeocodeR/inst/doc
speciesgeocodeR/inst/doc/data_cleaning_and_exploration.pdf
speciesgeocodeR/NAMESPACE
speciesgeocodeR/data
speciesgeocodeR/data/lemurs.rda
speciesgeocodeR/data/lemurs_test.rda
speciesgeocodeR/data/mdg_biomes.rda
speciesgeocodeR/data/lemurs_in.rda
speciesgeocodeR/data/countryref.rda
speciesgeocodeR/data/mdg_poly.rda
speciesgeocodeR/R
speciesgeocodeR/R/CalcRange.R speciesgeocodeR/R/GetElevation.R speciesgeocodeR/R/MapGrid.R speciesgeocodeR/R/Spgc2BioGeoBEARS.R speciesgeocodeR/R/summary.spgeoOUT.R speciesgeocodeR/R/PlotHull.R speciesgeocodeR/R/SpeciesGeoCoder.R speciesgeocodeR/R/RangeRichness.R speciesgeocodeR/R/MapRichness.R speciesgeocodeR/R/WriteOut.R speciesgeocodeR/R/plot.spgeoIN.R speciesgeocodeR/R/ReadPoints.R speciesgeocodeR/R/RichnessGrid.R speciesgeocodeR/R/SpGeoCodH.R speciesgeocodeR/R/plot.spgeoOUT.R speciesgeocodeR/R/CoExClass.R speciesgeocodeR/R/summary.spgeoIN.R speciesgeocodeR/R/speciesgeocodeR-internal.R speciesgeocodeR/R/WwfLoad.R speciesgeocodeR/R/SpGeoCod.R speciesgeocodeR/R/GeoClean.R
speciesgeocodeR/MD5
speciesgeocodeR/DESCRIPTION
speciesgeocodeR/man
speciesgeocodeR/man/summary.spgeoIN.Rd speciesgeocodeR/man/plot.spgeoIN.Rd speciesgeocodeR/man/RichnessGrid.Rd speciesgeocodeR/man/plot.spgeoOUT.Rd speciesgeocodeR/man/GetElevation.Rd speciesgeocodeR/man/PlotHull.Rd speciesgeocodeR/man/mdg_poly.Rd speciesgeocodeR/man/lemurs_test.Rd speciesgeocodeR/man/SpGeoCod.Rd speciesgeocodeR/man/speciesgeocodeR-package.Rd speciesgeocodeR/man/countryref.Rd speciesgeocodeR/man/CalcRange.Rd speciesgeocodeR/man/WriteOut.Rd speciesgeocodeR/man/summary.spgeoOUT.Rd speciesgeocodeR/man/RangeRichness.Rd speciesgeocodeR/man/lemurs.Rd speciesgeocodeR/man/SpGeoCodH.Rd speciesgeocodeR/man/WwfLoad.Rd speciesgeocodeR/man/SpeciesGeoCoder.Rd speciesgeocodeR/man/mdg_biomes.Rd speciesgeocodeR/man/GeoClean.Rd speciesgeocodeR/man/ReadPoints.Rd speciesgeocodeR/man/Spgc2Biogeobears.Rd speciesgeocodeR/man/MapGrid.Rd speciesgeocodeR/man/CoExClass.Rd speciesgeocodeR/man/MapRichness.Rd speciesgeocodeR/man/lemurs_in.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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All documentation is copyright its authors; we didn't write any of that.