speciesgeocodeR: Prepare Species Distributions for the Use in Phylogenetic Analyses

Preparation of species occurrences and distribution data for the use in phylogenetic analyses. SpeciesgeocodeR is built for data cleaning, data exploration and data analysis and especially suited for biogeographical and ecological questions on large datasets. The package includes the easy creation of summary-tables and -graphs and geographical maps, the automatic cleaning of geographic occurrence data, the calculating of coexistence matrices and species ranges (EOO) as well as mapping diversity in geographic areas.

AuthorAlexander Zizka [aut, cre]
Date of publication2015-10-18 01:20:59
MaintainerAlexander Zizka <alexander.zizka@bioenv.gu.se>
LicenseGPL-3
Version1.0-4

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Files in this package

speciesgeocodeR
speciesgeocodeR/inst
speciesgeocodeR/inst/extdata
speciesgeocodeR/inst/extdata/mdg_biomes_simple.shx
speciesgeocodeR/inst/extdata/mdg_biomes_simple.dbf
speciesgeocodeR/inst/extdata/mdg_biomes_simple.txt
speciesgeocodeR/inst/extdata/mdg_biomes_simple.qpj
speciesgeocodeR/inst/extdata/lemur_test.txt
speciesgeocodeR/inst/extdata/lemurs.txt
speciesgeocodeR/inst/extdata/mdg_biomes_simple.prj
speciesgeocodeR/inst/extdata/mdg_biomes_simple.shp
speciesgeocodeR/inst/doc
speciesgeocodeR/inst/doc/data_cleaning_and_exploration.pdf
speciesgeocodeR/NAMESPACE
speciesgeocodeR/data
speciesgeocodeR/data/lemurs.rda
speciesgeocodeR/data/lemurs_test.rda
speciesgeocodeR/data/mdg_biomes.rda
speciesgeocodeR/data/lemurs_in.rda
speciesgeocodeR/data/countryref.rda
speciesgeocodeR/data/mdg_poly.rda
speciesgeocodeR/R
speciesgeocodeR/R/CalcRange.R speciesgeocodeR/R/GetElevation.R speciesgeocodeR/R/MapGrid.R speciesgeocodeR/R/Spgc2BioGeoBEARS.R speciesgeocodeR/R/summary.spgeoOUT.R speciesgeocodeR/R/PlotHull.R speciesgeocodeR/R/SpeciesGeoCoder.R speciesgeocodeR/R/RangeRichness.R speciesgeocodeR/R/MapRichness.R speciesgeocodeR/R/WriteOut.R speciesgeocodeR/R/plot.spgeoIN.R speciesgeocodeR/R/ReadPoints.R speciesgeocodeR/R/RichnessGrid.R speciesgeocodeR/R/SpGeoCodH.R speciesgeocodeR/R/plot.spgeoOUT.R speciesgeocodeR/R/CoExClass.R speciesgeocodeR/R/summary.spgeoIN.R speciesgeocodeR/R/speciesgeocodeR-internal.R speciesgeocodeR/R/WwfLoad.R speciesgeocodeR/R/SpGeoCod.R speciesgeocodeR/R/GeoClean.R
speciesgeocodeR/MD5
speciesgeocodeR/DESCRIPTION
speciesgeocodeR/man
speciesgeocodeR/man/summary.spgeoIN.Rd speciesgeocodeR/man/plot.spgeoIN.Rd speciesgeocodeR/man/RichnessGrid.Rd speciesgeocodeR/man/plot.spgeoOUT.Rd speciesgeocodeR/man/GetElevation.Rd speciesgeocodeR/man/PlotHull.Rd speciesgeocodeR/man/mdg_poly.Rd speciesgeocodeR/man/lemurs_test.Rd speciesgeocodeR/man/SpGeoCod.Rd speciesgeocodeR/man/speciesgeocodeR-package.Rd speciesgeocodeR/man/countryref.Rd speciesgeocodeR/man/CalcRange.Rd speciesgeocodeR/man/WriteOut.Rd speciesgeocodeR/man/summary.spgeoOUT.Rd speciesgeocodeR/man/RangeRichness.Rd speciesgeocodeR/man/lemurs.Rd speciesgeocodeR/man/SpGeoCodH.Rd speciesgeocodeR/man/WwfLoad.Rd speciesgeocodeR/man/SpeciesGeoCoder.Rd speciesgeocodeR/man/mdg_biomes.Rd speciesgeocodeR/man/GeoClean.Rd speciesgeocodeR/man/ReadPoints.Rd speciesgeocodeR/man/Spgc2Biogeobears.Rd speciesgeocodeR/man/MapGrid.Rd speciesgeocodeR/man/CoExClass.Rd speciesgeocodeR/man/MapRichness.Rd speciesgeocodeR/man/lemurs_in.Rd

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