Spgc2Biogeobears: Geography Input for BioGeoBEARS

In speciesgeocodeR: Prepare Species Distributions for the Use in Phylogenetic Analyses

Description

Convert an object of the class spgeoOUT in the right format to be used as geography input for BioGeoBEARS.

Usage

Spgc2BioGeoBEARS(x, phyl = NULL, file = NULL, true.areas = T, true.species = T)

Arguments

x	an object of the clas 'spgeoOUT'
phyl	an object of the class phylo. An optional phylogeny to be used with BioGeoBEARS, to align species.
file	character. The complete path and filename to the outputfile.
true.areas	logical. If TRUE, areas with 0 species are removed from the matrix. Default = TRUE.
true.species	logical. If TRUE, species not occurring in any area are removed from the matrix. Default = TRUE.

Details

This will create a file in the working directory.

Value

A file in the working directory and a list.

Author(s)

Alexander Zizka, Ruud Scharn

Examples

## Not run: 
data(lemurs)
data(mdg_poly)

outp <- SpGeoCod(lemurs, mdg_poly)
conv <- Spgc2BioGeoBEARS(outp)

## End(Not run)

speciesgeocodeR documentation built on May 30, 2017, 12:34 a.m.