spikeSlabGAM: Bayesian Variable Selection and Model Choice for Generalized Additive Mixed Models

Bayesian variable selection, model choice, and regularized estimation for (spatial) generalized additive mixed regression models via stochastic search variable selection with spike-and-slab priors.

Author
Fabian Scheipl <fabian.scheipl@stat.uni-muenchen.de>
Date of publication
2016-02-29 18:39:55
Maintainer
Fabian Scheipl <fabian.scheipl@stat.uni-muenchen.de>
License
CC BY-NC-SA 4.0
Version
1.1-11
URLs

View on CRAN

Man pages

evalTerm
Get summaries of the posterior (predictive) distribution of...
fct
Generate design for a factor covariate
getPosteriorTerm
Get the posterior distribution of the linear predictor of a...
lin
Generate orthogonal polynomial base for a numeric covariate...
mrf
Generate design for a 2-D Gaussian Markov Random Field
plot.spikeSlabGAM
Generates graphical summaries of a fitted model
plotTerm
Plot the estimated effect of a model term.
predict.spikeSlabGAM
Obtain posterior predictive/credible intervals from a...
print.summary.spikeSlabGAM
Print summary for posterior of a 'spikeSlabGAM' fit
rnd
Generate design for a random intercept
sm
Generate a reparameterized P-spline base
spikeAndSlab
Set up and sample a spike-and-slab prior model.
spikeSlabGAM
Generate posterior samples for a GAMM with spike-and-slab...
srf
Generate design for penalized surface estimation.
ssGAM2Bugs
Convert samples from a model fitted with 'spikeSlabGAM' into...
ssGAMDesign
Generate design and model information for 'spikeSlabGAM'
summary.spikeSlabGAM
Summary for posterior of a 'spikeSlabGAM' fit
u
Generate design for an always included covariate

Files in this package

spikeSlabGAM
spikeSlabGAM/inst
spikeSlabGAM/inst/CITATION
spikeSlabGAM/inst/doc
spikeSlabGAM/inst/doc/UsingSpikeSlabGAM.R
spikeSlabGAM/inst/doc/UsingSpikeSlabGAM.pdf
spikeSlabGAM/inst/doc/UsingSpikeSlabGAM.Rnw
spikeSlabGAM/src
spikeSlabGAM/src/Makevars
spikeSlabGAM/src/sampler.c
spikeSlabGAM/src/utils.h
spikeSlabGAM/src/updaters.h
spikeSlabGAM/NAMESPACE
spikeSlabGAM/NEWS
spikeSlabGAM/R
spikeSlabGAM/R/utils.R
spikeSlabGAM/R/bugs.R
spikeSlabGAM/R/plot.R
spikeSlabGAM/R/predict.R
spikeSlabGAM/R/ssGAMDesign.R
spikeSlabGAM/R/spikeSlabGAM.R
spikeSlabGAM/R/terms.R
spikeSlabGAM/R/summary.R
spikeSlabGAM/R/spikeAndSlab.R
spikeSlabGAM/R/zzz.R
spikeSlabGAM/vignettes
spikeSlabGAM/vignettes/UsingSpikeSlabGAM-plotm1sm2fprep.pdf
spikeSlabGAM/vignettes/UsingSpikeSlabGAM.bib
spikeSlabGAM/vignettes/UsingSpikeSlabGAM.Rnw
spikeSlabGAM/MD5
spikeSlabGAM/build
spikeSlabGAM/build/vignette.rds
spikeSlabGAM/DESCRIPTION
spikeSlabGAM/man
spikeSlabGAM/man/mrf.Rd
spikeSlabGAM/man/evalTerm.Rd
spikeSlabGAM/man/fct.Rd
spikeSlabGAM/man/ssGAM2Bugs.Rd
spikeSlabGAM/man/predict.spikeSlabGAM.Rd
spikeSlabGAM/man/ssGAMDesign.Rd
spikeSlabGAM/man/getPosteriorTerm.Rd
spikeSlabGAM/man/u.Rd
spikeSlabGAM/man/summary.spikeSlabGAM.Rd
spikeSlabGAM/man/srf.Rd
spikeSlabGAM/man/plot.spikeSlabGAM.Rd
spikeSlabGAM/man/spikeSlabGAM.Rd
spikeSlabGAM/man/spikeAndSlab.Rd
spikeSlabGAM/man/rnd.Rd
spikeSlabGAM/man/plotTerm.Rd
spikeSlabGAM/man/sm.Rd
spikeSlabGAM/man/lin.Rd
spikeSlabGAM/man/print.summary.spikeSlabGAM.Rd