spikeSlabGAM: Bayesian Variable Selection and Model Choice for Generalized Additive Mixed Models
Version 1.1-11

Bayesian variable selection, model choice, and regularized estimation for (spatial) generalized additive mixed regression models via stochastic search variable selection with spike-and-slab priors.

Browse man pages Browse package API and functions Browse package files

AuthorFabian Scheipl <fabian.scheipl@stat.uni-muenchen.de>
Date of publication2016-02-29 18:39:55
MaintainerFabian Scheipl <fabian.scheipl@stat.uni-muenchen.de>
LicenseCC BY-NC-SA 4.0
Version1.1-11
URL https://github.com/fabian-s/spikeSlabGAM
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("spikeSlabGAM")

Man pages

evalTerm: Get summaries of the posterior (predictive) distribution of...
fct: Generate design for a factor covariate
getPosteriorTerm: Get the posterior distribution of the linear predictor of a...
lin: Generate orthogonal polynomial base for a numeric covariate...
mrf: Generate design for a 2-D Gaussian Markov Random Field
plot.spikeSlabGAM: Generates graphical summaries of a fitted model
plotTerm: Plot the estimated effect of a model term.
predict.spikeSlabGAM: Obtain posterior predictive/credible intervals from a...
print.summary.spikeSlabGAM: Print summary for posterior of a 'spikeSlabGAM' fit
rnd: Generate design for a random intercept
sm: Generate a reparameterized P-spline base
spikeAndSlab: Set up and sample a spike-and-slab prior model.
spikeSlabGAM: Generate posterior samples for a GAMM with spike-and-slab...
srf: Generate design for penalized surface estimation.
ssGAM2Bugs: Convert samples from a model fitted with 'spikeSlabGAM' into...
ssGAMDesign: Generate design and model information for 'spikeSlabGAM'
summary.spikeSlabGAM: Summary for posterior of a 'spikeSlabGAM' fit
u: Generate design for an always included covariate

Functions

allInvolvedTerms Source code
centerBase Source code
customFunctionEnv Source code
evalTerm Man page Source code
fct Man page Source code
frob Source code
getModels Source code
getPosteriorTerm Man page Source code
insidePoly Source code
irlba Source code
iwls.start Source code
lin Man page Source code
matrixInvRoot Source code
mmDesign Source code
mrf Man page Source code
onAttach Source code
orthoDesign Source code
plot.spikeSlabGAM Man page Source code
plotTerm Man page Source code
predict.spikeSlabGAM Man page Source code
print.summary.spikeSlabGAM Man page Source code
psBasis Source code
rnd Man page Source code
safeDeparse Source code
scaleMat Source code
sm Man page Source code
spikeAndSlab Man page Source code
spikeSlabGAM Man page Source code
srf Man page Source code
ssGAM2Bugs Man page Source code
ssGAMDesign Man page Source code
summarizeF Source code
summary.spikeSlabGAM Man page Source code
tp2DBasis Source code
u Man page Source code
wrapCat Source code

Files

inst
inst/CITATION
inst/doc
inst/doc/UsingSpikeSlabGAM.R
inst/doc/UsingSpikeSlabGAM.pdf
inst/doc/UsingSpikeSlabGAM.Rnw
src
src/Makevars
src/sampler.c
src/utils.h
src/updaters.h
NAMESPACE
NEWS
R
R/utils.R
R/bugs.R
R/plot.R
R/predict.R
R/ssGAMDesign.R
R/spikeSlabGAM.R
R/terms.R
R/summary.R
R/spikeAndSlab.R
R/zzz.R
vignettes
vignettes/UsingSpikeSlabGAM-plotm1sm2fprep.pdf
vignettes/UsingSpikeSlabGAM.bib
vignettes/UsingSpikeSlabGAM.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/mrf.Rd
man/evalTerm.Rd
man/fct.Rd
man/ssGAM2Bugs.Rd
man/predict.spikeSlabGAM.Rd
man/ssGAMDesign.Rd
man/getPosteriorTerm.Rd
man/u.Rd
man/summary.spikeSlabGAM.Rd
man/srf.Rd
man/plot.spikeSlabGAM.Rd
man/spikeSlabGAM.Rd
man/spikeAndSlab.Rd
man/rnd.Rd
man/plotTerm.Rd
man/sm.Rd
man/lin.Rd
man/print.summary.spikeSlabGAM.Rd
spikeSlabGAM documentation built on May 19, 2017, 7:51 p.m.