sprint: Simple Parallel R INTerface
Version 1.0.7

SPRINT (Simple Parallel R INTerface) is a parallel framework for R. It provides a High Performance Computing (HPC) harness which allows R scripts to run on HPC clusters. SPRINT contains a library of selected R functions that have been parallelized. Functions are named after the original R function with the added prefix 'p', i.e. the parallel version of cor() in SPRINT is called pcor(). Call to the parallel R functions are included directly in standard R scripts. SPRINT contains functions for correlation (pcor), partitioning around medoids (ppam), apply (papply), permutation testing (pmaxT), bootstrapping (pboot), random forest (prandomForest), rank product (pRP) and hamming distance (pstringdistmatrix).

AuthorUniversity of Edinburgh SPRINT Team <sprint@ed.ac.uk>
Date of publication2014-09-29 18:03:02
MaintainerEilidh Troup <e.troup@epcc.ed.ac.uk>
LicenseGPL (>= 3)
Version1.0.7
URL http://www.r-sprint.org
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("sprint")

Popular man pages

papply: Parallel Apply
pboot: Parallel Bootstrapping
pcombine: pcombine
ppam: Parallel Partitioning Around Medoids
prandomForest: Parallel random forest generation
pRSadvance: pRSadvance
ptest: SPRINT Installation Test
See all...

All man pages Function index File listing

Man pages

init.rng: init.rng
papply: Parallel Apply
pboot: Parallel Bootstrapping
pcombine: pcombine
pcor: Parallel Correlation
pmaxT: Ajusted p-values for step down multiple testing
ppam: Parallel Partitioning Around Medoids
prandomForest: Parallel random forest generation
pRP: Parallel Rank Product
pRPadvance: pRPadvance
pRS: pRS
pRSadvance: pRSadvance
pstringdistmatrix: Parallel compute hamming distance between strings
pterminate: SPRINT close
ptest: SPRINT Installation Test
reset.rng: reset.rng
sprint: Overview of SPRINT

Functions

SPRINT Man page
anti.arr Source code
antithetic.array Source code
ast.lib Source code
balanced.array Source code
boot.return Source code
bsample Source code
checkX Source code
checkclasslabel Source code
checkothers Source code
extra.array Source code
getmaxB Source code
importance.array Source code
importance.array.bal Source code
index.array Source code
init.rng Man page Source code
init.rng.worker Source code
isMatrix Source code
na2number Source code
niceres Source code
normalize Source code
number2na Source code
onAttach Source code
onUnload Source code
ordinary.array Source code
pRP Man page
pRPadvance Man page
pRS Man page
pRSadvance Man page
papply Man page Source code
pboot Man page Source code
pcombine Man page
pcor Man page Source code
permutation.array Source code
pmaxT Man page Source code
ppam Man page Source code
prandomForest Man page
prandomForest.default Man page
print.pam Source code Source code
print.summary.pam Source code
pstringdistmatrix Man page Source code
pterminate Man page Source code
ptest Man page Source code
reset.rng Man page Source code
reset.rng.worker Source code
rperm Source code
sample0 Source code
summary.pam Source code
transformL Source code
transformX Source code

Files

inst
inst/CITATION
inst/test_suite
inst/test_suite/all_test_suite.R
inst/test_suite/pcor_test_suite.R
inst/test_suite/all_results_2014-09-24_Darwin_.log
inst/test_suite/All-unit-test-log.html
inst/test_suite/cor_test.R
inst/test_suite/pcor_test.R
inst/test_suite/ppam_test_suite.R
inst/test_suite/ptest_test_suite.R
inst/test_suite/README
inst/test_suite/papply_test_suite.R
inst/test_suite/install_test.R
inst/test_suite/smallPcorTest.R
inst/test_suite/batch_ppam_once_test_suite.R
inst/test_suite/pstringdistmatrix_test_suite.R
inst/test_suite/pmaxT_test_suite.R
inst/test_suite/pboot_test_suite.R
inst/test_suite/all_results_2014-09-04_Darwin_.log
inst/test_suite/batchRunTests.sh
inst/test_suite/small_pmaxT_test_suite.R
inst/test_suite/batch_ppam_loop_test_suite.R
inst/test_suite/all_results_2014-09-03_Darwin_.log
inst/systemTest
inst/systemTest/pstringDist
inst/systemTest/pstringDist/large_test.R
inst/systemTest/pstringDist/pstringDist_sys_test.pbs
inst/systemTest/pstringDist/large_test.sh
inst/systemTest/pstringDist/pstringDist_sys_test.R
inst/systemTest/pcor
inst/systemTest/pcor/pcor.sh
inst/systemTest/pcor/pcor_sys_test.R
inst/systemTest/pcor/pcor_sys_test.pbs
inst/systemTest/papply
inst/systemTest/papply/large_test.R
inst/systemTest/batch
inst/systemTest/batch/ppam_loop_test.R
inst/systemTest/batch/ppam_once_test.R
inst/doc
inst/doc/External_User_Guide_1.0.7.docx
inst/doc/External_Release_Notes_1.0.7.pdf
inst/doc/External_User_Guide_1.0.7.pdf
inst/doc/External_Release_Notes_1.0.7.docx
inst/unitTests
inst/unitTests/pboot
inst/unitTests/pboot/runnit_weight.R
inst/unitTests/pboot/runnit_simple.R
inst/unitTests/pboot/runnit_dotdotdot.R
inst/unitTests/pboot/runnit_boot_example.R
inst/unitTests/pboot/runnit_standard_datacol.R
inst/unitTests/pboot/runnit_scene3.R
inst/unitTests/pboot/runnit_standard_tn.R
inst/unitTests/pboot/runnit_standard.R
inst/unitTests/pboot/runnit_m.R
inst/unitTests/pcor
inst/unitTests/pcor/runit_correct_args.R
inst/unitTests/pcor/runit_dimnames.R
inst/unitTests/pmaxT
inst/unitTests/pmaxT/runit_correct_args.R
inst/unitTests/pmaxT/runit_test_B.R
inst/unitTests/pmaxT/runit_small_test.R
inst/unitTests/pmaxT/runit_wrong_args.R
inst/unitTests/papply
inst/unitTests/papply/runit_test.R
inst/unitTests/ppam
inst/unitTests/ppam/runit_exercise1.R
inst/unitTests/ppam/runit_correct_args.R
inst/unitTests/ppam/runit_dimnames.R
inst/unitTests/ppam/runit_correct_args_ff.R
inst/unitTests/ptest
inst/unitTests/ptest/runit_ptest.R
inst/unitTests/pstringdistmatrix
inst/unitTests/pstringdistmatrix/runit_simple.R
configure.ac
src
src/Makefile
src/sprint.c
src/algorithms
src/algorithms/pboot
src/algorithms/pboot/implementation
src/algorithms/pboot/implementation/boot.c
src/algorithms/pboot/interface
src/algorithms/pboot/interface/pboot.c
src/algorithms/prandomForest
src/algorithms/prandomForest/implementation
src/algorithms/prandomForest/implementation/random_forest_driver.c
src/algorithms/prandomForest/interface
src/algorithms/prandomForest/interface/random_forest.c
src/algorithms/pcor
src/algorithms/pcor/implementation
src/algorithms/pcor/implementation/kernel.c
src/algorithms/pcor/implementation/kernel.h
src/algorithms/pcor/implementation/correlation.c
src/algorithms/pcor/interface
src/algorithms/pcor/interface/pcor.c
src/algorithms/rng
src/algorithms/rng/implementation
src/algorithms/rng/implementation/sprint-rng-worker.c
src/algorithms/rng/interface
src/algorithms/rng/interface/sprint-rng.c
src/algorithms/pmaxT
src/algorithms/pmaxT/implementation
src/algorithms/pmaxT/implementation/mt.h
src/algorithms/pmaxT/implementation/mt.c
src/algorithms/pmaxT/implementation/pairt_sampling_fixed.c
src/algorithms/pmaxT/implementation/stat_order.c
src/algorithms/pmaxT/implementation/random.c
src/algorithms/pmaxT/implementation/pairt_sampling.c
src/algorithms/pmaxT/implementation/permutation.c
src/algorithms/pmaxT/implementation/bootloop.c
src/algorithms/pmaxT/implementation/Rpack.c
src/algorithms/pmaxT/implementation/block_sampling_fixed.c
src/algorithms/pmaxT/implementation/stat_func.c
src/algorithms/pmaxT/implementation/sampling_fixed.c
src/algorithms/pmaxT/implementation/sampling.c
src/algorithms/pmaxT/interface
src/algorithms/pmaxT/interface/pmaxT.c
src/algorithms/papply
src/algorithms/papply/implementation
src/algorithms/papply/implementation/apply.c
src/algorithms/papply/implementation/ffapply.c
src/algorithms/papply/implementation/ffapply.h
src/algorithms/papply/implementation/main.c
src/algorithms/papply/implementation/lapply.c
src/algorithms/papply/implementation/comms.c
src/algorithms/papply/implementation/main.h
src/algorithms/papply/implementation/apply.h
src/algorithms/papply/implementation/comms.h
src/algorithms/papply/implementation/lapply.h
src/algorithms/papply/interface
src/algorithms/papply/interface/papply.c
src/algorithms/ppam
src/algorithms/ppam/implementation
src/algorithms/ppam/implementation/bswap.c
src/algorithms/ppam/implementation/pamedoids.h
src/algorithms/ppam/implementation/silhouette.h
src/algorithms/ppam/implementation/silhouette.c
src/algorithms/ppam/implementation/pamedoids.c
src/algorithms/ppam/implementation/bswap.h
src/algorithms/ppam/implementation/cstat.h
src/algorithms/ppam/implementation/cstat.c
src/algorithms/ppam/interface
src/algorithms/ppam/interface/ppam.c
src/algorithms/ppam/interface/ppam.h
src/algorithms/common
src/algorithms/common/serialize.c
src/algorithms/common/utils.c
src/algorithms/common/functions.c
src/algorithms/common/mmap.h
src/algorithms/common/utils.h
src/algorithms/common/mmap.c
src/algorithms/common/serialize.h
src/algorithms/pRP
src/algorithms/pRP/implementation
src/algorithms/pRP/implementation/rank-product.h
src/algorithms/pRP/implementation/boot-rank-product.c
src/algorithms/pRP/implementation/rp-generic.c
src/algorithms/pRP/implementation/rank-product.c
src/algorithms/pRP/interface
src/algorithms/pRP/interface/rp.c
src/algorithms/pRP/interface/boot-rp.c
src/algorithms/psvm
src/algorithms/psvm/implementation
src/algorithms/psvm/implementation/Rsvm.h
src/algorithms/psvm/implementation/svm.h
src/algorithms/psvm/implementation/svm_call.c
src/algorithms/psvm/implementation/Rsvm.c
src/algorithms/psvm/implementation/svm.cpp
src/algorithms/psvm/interface
src/algorithms/psvm/interface/psvm.c
src/algorithms/psvm/interface/psvm.h
src/algorithms/ptest
src/algorithms/ptest/implementation
src/algorithms/ptest/implementation/test.c
src/algorithms/ptest/interface
src/algorithms/ptest/interface/ptest.c
src/algorithms/pstringdistmatrix
src/algorithms/pstringdistmatrix/implementation
src/algorithms/pstringdistmatrix/implementation/stringDist.c
src/algorithms/pstringdistmatrix/implementation/stringDist_kernel.h
src/algorithms/pstringdistmatrix/implementation/stringDist_kernel.c
src/algorithms/pstringdistmatrix/interface
src/algorithms/pstringdistmatrix/interface/pstringDist.c
src/functions.h
src/Makevars.in
src/sprint.h
NAMESPACE
NEWS
R
R/pcombine.R
R/papply.R
R/pstringdistmatrix.R
R/messages.R
R/prandomForest.default.R
R/prandomForest.R
R/pterminate.R
R/ptest.R
R/prandomForest.formula.R
R/pRP.R
R/pmaxT.R
R/pboot.R
R/pcor.R
R/sprint-rng.R
R/zzz.R
R/ppam.R
MD5
README
DESCRIPTION
configure
man
man/pRSadvance.Rd
man/pterminate.Rd
man/sprint.Rd
man/pstringdistmatrix.Rd
man/pboot.Rd
man/pRS.Rd
man/pcor.Rd
man/ppam.Rd
man/prandomForest.Rd
man/ptest.Rd
man/pRPadvance.Rd
man/pmaxT.Rd
man/reset.rng.Rd
man/pcombine.Rd
man/papply.Rd
man/init.rng.Rd
man/pRP.Rd
cleanup
tools
tools/install-sh
tools/m4
tools/m4/acx_mpi.m4
tools/m4/README
tools/config.guess
tools/reconfigure.sh
tools/config.sub
sprint documentation built on May 20, 2017, 5:56 a.m.

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