Man pages for spruce
Spatial Random Effects Clustering of Single Cell Data
| build_knn_graph | Make KNN network |
| coords_df_sim | stx Mouse brain coordinates |
| fit_msn | Multivariate skew-normal mixture model clustering |
| fit_msn_PG_smooth | Multivariate skew normal mixture model clustering - PG... |
| fit_msn_smooth | Spatial multivariate skew normal mixture model clustering |
| fit_mvn | Multivariate normal mixture model clustering |
| fit_mvn_MCAR | Multivariate normal spatial mixture model clustering |
| fit_mvn_PG | Multivariate normal mixture model clustering - PG multinom... |
| fit_mvn_PG_CAR | Multivariate normal mixture model clustering - PG multinom... |
| fit_mvn_PG_CAR_MCAR | Multivariate normal spatial mixture model clustering w/ PG... |
| fit_mvn_PG_CAR_MCAR_smooth | Multivariate normal spatial mixture model clustering w/ PG... |
| fit_mvn_PG_CAR_smooth | Multivariate normal mixture model clustering - PG multinom... |
| fit_mvn_PG_MCAR | Multivariate normal spatial mixture model clustering w/ PG... |
| fit_mvn_PG_MCAR_smooth | Multivariate normal spatial mixture model clustering w/ PG... |
| fit_mvn_PG_smooth | Multivariate normal mixture model clustering - PG multinom... |
| fit_mvn_smooth | Spatial multivariate normal mixture model clustering |
| fit_spruce | Fit spruce Bayesian spatial mixture model |
| get_map | Get MAP estimate of cluster indicators |
| get_psi_sums | Sum all neighboring psis |
| get_scores | Calculate cluster uncertainty |
| plot_deltas | Plot delta parameters from multinomial regression model |
| psi_sums | Sum neighboring psis in spot i |
| remap_canonical2 | Canonical re-mapping of mixture component labels |
| spruce | SPRUCE |
