cox_data | cox_data Univariate cox proportional hazards regression data. |
dot_data | dot_data A data frame. |
dotplot | Plotting the Dot plot. |
FastSEAscore | Calculate the enrichment score of the pathways . |
get_heatmap | Plotting a heatmap with subtype labels. |
get_indicate | Indicator function. |
get_mut_status | Converts MAF file or data in other formats into mutation... |
get_RWR_ES | Calculate the single-sample mutation-based pathway enrichment... |
get_samp_class | Determining cancer subtypes using unsupervised spectral... |
get_seeds_score | Calculate the local wight of seed nodes. |
get_univarCox_result | Perform the univariate Cox proportional hazards regression... |
mountain_plot | Plotting the density ridges plot. |
MRWR | A global propagation algorithm, random walk with restart... |
mut_onco | mut_onco A binary mutation matrix. |
mut_status | mut_status A binary mutation matrix. |
Oncoplot | Drawing a waterfall plot of a particular pathway. |
Path_ES | Path_ES Single-sample mutation-based pathway enrichment score... |
Path_Name | Path_Name |
RWR_res | RWR_res Random walk results based on mutated genes in a... |
samp_class_onco | samp_class_onco |
sample_class | sample_class The subtype labels of samples. |
Seeds_Score | Seeds_Score The local weight of seed nodes. |
sur_onco | sur_onco |
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