mountain_plot: Plotting the density ridges plot.

In ssMutPA: Single-Sample Mutation-Based Pathway Analysis

Plotting the density ridges plot.

Description

The function 'mountain_plot' is used to draw a graph to reflect the distribution of the data.

Usage

mountain_plot(data, sample_class, Path_name)

Arguments

data	A pathway activity score matrix,which row names represent the pathways and the column names are samples.
sample_class	A vector containing subtype labels of the samples.
Path_name	The names of the pathways that you want to show in the graph.The 'Path_name' must be included in the row names of the data.

Value

Density ridges plot

Examples

#load the data
data(Path_ES,sample_class)
#perform the function `mountain_plot`.
mountain_plot(data=Path_ES,sample_class=sample_class,Path_name=rownames(Path_ES)[c(12,20,74)])

ssMutPA documentation built on Oct. 16, 2024, 1:06 a.m.