get_univarCox_result: Perform the univariate Cox proportional hazards regression...
In ssMutPA: Single-Sample Mutation-Based Pathway Analysis
View source: R/specc_cluster.R
get_univarCox_result R Documentation
Perform the univariate Cox proportional hazards regression analysis.
Description
The function 'get_univarCox_result' is used to perform the univariate Cox proportional hazards regression analysis.
Usage
get_univarCox_result(DE_path_sur)
Arguments
DE_path_sur
A matrix containing the activity values of all pathways in each sample, along with the survival time and survival status of the samples.Note that the column names of survival time and survival status must be "survival" and "event".
Value
A data frame containing the pathways' coefficient, HR, confidence interval, and survival related difference p-value .
Examples
#get path of the mutation annotation file.
data(cox_data)
#perform function `get_univarCox_result`.
res<-get_univarCox_result(cox_data)
ssMutPA documentation built on Oct. 16, 2024, 1:06 a.m.
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View source: R/specc_cluster.R
| get_univarCox_result | R Documentation |
Perform the univariate Cox proportional hazards regression analysis.
Description
The function 'get_univarCox_result' is used to perform the univariate Cox proportional hazards regression analysis.
Usage
get_univarCox_result(DE_path_sur)
Arguments
DE_path_sur |
A matrix containing the activity values of all pathways in each sample, along with the survival time and survival status of the samples.Note that the column names of survival time and survival status must be "survival" and "event". |
Value
A data frame containing the pathways' coefficient, HR, confidence interval, and survival related difference p-value .
Examples
#get path of the mutation annotation file.
data(cox_data)
#perform function `get_univarCox_result`.
res<-get_univarCox_result(cox_data)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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