negll: Negative Log Likelihood
In sssc: Same Species Sample Contamination Detection
Description
Calculates negative log likelihood for beta binomial distribution.
Usage
1
negll(x, size, prob, rho)
Arguments
x
Depth of alternative allele
size
Total depth
prob
Theoretical probability for heterozygous is 0.5, for homozygous is 0.999
rho
Rho parameter of Beta-Binomial distribution of alternative allele
sssc documentation built on May 2, 2019, 4:03 p.m.
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Description
Calculates negative log likelihood for beta binomial distribution.
Usage
1 | negll(x, size, prob, rho)
|
Arguments
x |
Depth of alternative allele |
size |
Total depth |
prob |
Theoretical probability for heterozygous is 0.5, for homozygous is 0.999 |
rho |
Rho parameter of Beta-Binomial distribution of alternative allele |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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