rmChangePoint: Remove CNV regions within VCF files by changepoint method
In sssc: Same Species Sample Contamination Detection
Description
Usage
Arguments
Value
Description
Remove CNV regions within VCF files by changepoint method
Usage
1
rmChangePoint(vcf, threshold, skew, lower, upper)
Arguments
vcf
Input VCF files
threshold
Threshold for allele frequency
skew
Skewness for allele frequency
lower
Lower bound for allele frequency region
upper
Upper bound for allele frequency region
Value
VCF object without changepoint region
sssc documentation built on May 2, 2019, 4:03 p.m.
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Description Usage Arguments Value
Description
Remove CNV regions within VCF files by changepoint method
Usage
1 | rmChangePoint(vcf, threshold, skew, lower, upper)
|
Arguments
vcf |
Input VCF files |
threshold |
Threshold for allele frequency |
skew |
Skewness for allele frequency |
lower |
Lower bound for allele frequency region |
upper |
Upper bound for allele frequency region |
Value
VCF object without changepoint region
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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