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### shrinkt.R (2013-09-01)
###
### Shrinkage t Statistic
###
### Copyright 2006-2013 Rainer Opgen-Rhein, Verena Zuber and Korbinian Strimmer
###
###
### This file is part of the `st' library for R and related languages.
### It is made available under the terms of the GNU General Public
### License, version 3, or at your option, any later version,
### incorporated herein by reference.
###
### This program is distributed in the hope that it will be
### useful, but WITHOUT ANY WARRANTY; without even the implied
### warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
### PURPOSE. See the GNU General Public License for more
### details.
###
### You should have received a copy of the GNU General Public
### License along with this program; if not, write to the Free
### Software Foundation, Inc., 59 Temple Place - Suite 330, Boston,
### MA 02111-1307, USA
shrinkt.stat = function (X, L, lambda.var, lambda.freqs, var.equal=TRUE, paired=FALSE, verbose=TRUE)
{
if (paired)
{
X = pvt.pairX(X, L)
L = rep("paired", dim(X)[1])
}
FUN = shrinkt.fun(L=L, lambda.var=lambda.var, lambda.freqs=lambda.freqs,
var.equal=var.equal, verbose=verbose)
score = FUN(X)
return( score )
}
shrinkt.fun = function (L, lambda.var, lambda.freqs, var.equal=TRUE, verbose=TRUE)
{
# shrink cat with lambda=1 equals shrink t
return( shrinkcat.fun(L=L, lambda=1, lambda.var=lambda.var, lambda.freqs=lambda.freqs,
var.equal=var.equal, verbose=verbose) )
}
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