API for stanette
R Interface to Stan
| Global functions | |
|---|---|
| .ac_fun | Source code |
| .ac_plot_data | Source code |
| .ac_plot_data_multi | Source code |
| .add_aesthetics | Source code |
| .check_object | Source code |
| .get_stan_params | Source code |
| .get_stanreg_parnames | Source code |
| .make_plot_data | Source code |
| .max_td | Source code |
| .mode_check | Source code |
| .nuts_args_check | Source code |
| .nuts_return | Source code |
| .onAttach | Source code |
| .onLoad | Source code |
| .onUnload | Source code |
| .p_hist | Source code |
| .remove_udiag_pars | Source code |
| .reshape_df | Source code |
| .reshape_sample | Source code |
| .rhat_neff_mcse_hist | Source code |
| .sampler_param_df | Source code |
| .sampler_param_vs_param | Source code |
| .sampler_param_vs_sampler_param_violin | Source code |
| .sampler_params_post_warmup | Source code |
| .treedepth_ndivergent_hist | Source code |
| .upars | Source code |
| .vb_check | Source code |
| .warn_march_makevars | Source code |
| As.mcmc.list | Man page Source code |
| OUT | Man page |
| PKG_CPPFLAGS_env_fun | Source code |
| PMXStanFit | Man page Source code |
| PMXStanModel | Man page Source code |
| RNG | Man page |
| Rhat | Man page Source code |
| [.simsummary | Man page |
| `%ifNULL%` | Source code |
| `names<-.stanfit` | Source code |
| all_int_eq | Source code |
| append_id | Source code |
| as.array.stanfit | Man page Source code |
| as.data.frame.stanfit | Man page Source code |
| as.matrix.stanfit | Man page Source code |
| as.mcmc.list.stanfit | Source code |
| autocorrelation | Source code |
| autocovariance | Source code |
| avoid_crash | Source code |
| boost_path_fun | Source code |
| boost_path_fun2 | Source code |
| boost_url | Source code |
| calc_starts | Source code |
| check_args | Source code |
| check_divergences | Man page Source code |
| check_energy | Man page Source code |
| check_hmc_diagnostics | Man page Source code |
| check_pars | Source code |
| check_pars_first | Source code |
| check_pars_second | Source code |
| check_seed | Source code |
| check_treedepth | Man page Source code |
| colVars | Source code |
| color_vector | Source code |
| color_vector_chain | Source code |
| combine_msd_quan | Source code |
| compile | Man page Source code |
| compile.PMXStanModel | Source code |
| config_argss | Source code |
| constrain_pars | Man page |
| constrain_pars,stanfit-method | Man page |
| conv_quantile | Source code |
| copy | Man page Source code |
| copy.PMXStanModel | Source code |
| create_progress_html_file | Source code |
| create_skeleton | Source code |
| cxxfun_from_dll | Source code |
| cxxfun_from_dso_bin | Source code |
| cxxfunctionplus | Source code |
| d1_nm_poppk | Man page |
| d2_nm_poppkpd | Man page |
| d3_nm_idvpkpd | Man page |
| data_list2array | Source code |
| data_preprocess | Source code |
| default_summary_probs | Source code |
| delete_stan_demo_folder | Source code |
| dim.stanfit | Man page Source code |
| dimnames.stanfit | Man page Source code |
| doctor_cppcode | Source code |
| dotfnames_to_sqrfnames | Source code |
| dso_path | Source code |
| eigen_path_fun | Source code |
| ess_bulk | Man page Source code |
| ess_mean | Source code |
| ess_quantile | Source code |
| ess_rfun | Source code |
| ess_sd | Source code |
| ess_tail | Man page Source code |
| exposeStanClass | Source code |
| expose_stan_functions | Man page Source code |
| expose_stan_functions_hacks | Source code |
| extract | Man page |
| extract,stanfit-method | Man page |
| extract_sparse_parts | Man page Source code |
| fft_next_good_size | Source code |
| filename_ext | Source code |
| filename_rm_ext | Source code |
| flat_one_par | Source code |
| flatnames | Source code |
| generatePKODEs | Source code |
| generateStanCodePK | Source code |
| generateStanCodePKPD | Source code |
| get_CXX | Source code |
| get_Rcpp_module_def_code | Source code |
| get_adaptation_info | Man page |
| get_adaptation_info,stanfit-method | Man page |
| get_all_makefile_paths | Source code |
| get_bfmi | Man page Source code |
| get_cppcode | Man page |
| get_cppcode,stanmodel-method | Man page |
| get_cppo_mode | Man page |
| get_cppo_mode,stanfit-method | Man page |
| get_cxxflags | Man page |
| get_cxxflags,stanmodel-method | Man page |
| get_cxxo_level | Source code |
| get_dims_from_fnames | Source code |
| get_divergent_iterations | Man page Source code |
| get_elapsed_time | Man page |
| get_elapsed_time,stanfit-method | Man page |
| get_inits | Man page |
| get_inits,stanfit-method | Man page |
| get_kept_samples | Source code |
| get_kept_samples2 | Source code |
| get_logposterior | Man page |
| get_logposterior,stanfit-method | Man page |
| get_low_bfmi_chains | Man page Source code |
| get_makefile_flags | Source code |
| get_makefile_txt | Source code |
| get_max_treedepth_iterations | Man page Source code |
| get_model_strcode | Source code |
| get_num_divergent | Man page Source code |
| get_num_leapfrog_per_iteration | Man page Source code |
| get_num_max_treedepth | Man page Source code |
| get_num_upars | Man page |
| get_num_upars,stanfit-method | Man page |
| get_par_summary | Source code |
| get_par_summary_msd | Source code |
| get_par_summary_quantile | Source code |
| get_posterior_mean | Man page |
| get_posterior_mean,stanfit-method | Man page |
| get_rhat_cols | Source code |
| get_rng | Man page Source code |
| get_sampler_params | Man page |
| get_sampler_params,stanfit,logical-method | Man page |
| get_samples | Source code |
| get_samples2 | Source code |
| get_seed | Man page |
| get_seed,stanfit-method | Man page |
| get_seeds | Man page |
| get_seeds,stanfit-method | Man page |
| get_stan_param_names | Source code |
| get_stancode | Man page |
| get_stancode,stanfit-method | Man page |
| get_stancode,stanmodel-method | Man page |
| get_stanmodel | Man page |
| get_stanmodel,stanfit-method | Man page |
| get_stream | Man page Source code |
| get_time_from_csv | Source code |
| get_treedepth_threshold | Source code |
| git_head | Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code |
| gofplot | Man page Source code |
| gofplot.PMXStanFit | Source code |
| gqs | Man page |
| gqs,stanmodel-method | Man page |
| gqs_light | Source code |
| grad_log_prob | Man page |
| grad_log_prob,stanfit-method | Man page |
| idv.obs.pred.vs.time | Man page Source code |
| idv.obs.pred.vs.time.PMXStanFit | Source code |
| idx_col2rowm | Source code |
| idx_row2colm | Source code |
| if_debug_defined | Source code |
| if_ndebug_defined | Source code |
| inc_path_fun | Source code |
| init_rstan_opt_env | Source code |
| inlineCxxPlugin | Source code |
| instant.stan.extension | Man page Source code |
| is.array.stanfit | Man page Source code |
| is.sparc | Source code |
| is.stanfit | Source code |
| is.stanreg | Source code |
| is_arg_deprecated | Source code |
| is_arg_recognizable | Source code |
| is_constant | Source code |
| is_dir_writable | Source code |
| is_legal_stan_vname | Source code |
| is_named_list | Source code |
| is_null_cxxfun | Source code |
| is_null_ptr | Source code |
| is_sf_valid | Source code |
| is_sfinstance_valid | Source code |
| is_sm_valid | Source code |
| last_makefile | Source code |
| legitimate_model_name | Source code |
| legitimate_space_in_path | Source code |
| list_as_integer_if_doable | Source code |
| log_lik_i_stanfit | Source code |
| log_lik_i_upars_stanfit | Source code |
| log_prob | Man page |
| log_prob,stanfit-method | Man page |
| log_prob_upars_stanfit | Source code |
| log_sum_exp | Source code |
| loo | Man page |
| loo,stanfit-method | Man page |
| loo.stanfit | Man page Source code |
| loo_moment_match | Man page |
| loo_moment_match,stanfit-method | Man page |
| loo_moment_match.stanfit | Man page Source code |
| lookup | Man page Source code |
| makeconf_path | Man page Source code |
| makevars_user | Source code |
| mcse_mean | Source code |
| mcse_quantile | Source code |
| mcse_sd | Source code |
| mk_cppmodule | Source code |
| mklist | Source code |
| monitor | Man page Source code |
| multi_idx_row2colm | Source code |
| names.stanfit | Man page Source code |
| names<-.stanfit | Man page |
| new_empty_stanfit | Source code |
| nlist | Man page |
| num_pars | Source code |
| obj_size_str | Source code |
| obs.vs.pred | Man page Source code |
| obs.vs.pred.PMXStanFit | Source code |
| optimizing | Man page |
| optimizing,stanmodel-method | Man page |
| pairs.stanfit | Man page |
| par_traceplot | Source code |
| paridx_fun | Source code |
| pars_total_indexes | Source code |
| parse_data | Source code |
| parse_stancsv_comments | Source code |
| plot,stanfit,missing-method | Man page |
| plot,stanfit-method | Man page |
| plot.pred.obs | Source code |
| plot.pred.rsd | Source code |
| plot.sbc | Man page Source code |
| plot_rhat_legend | Source code |
| post_draws_stanfit | Source code |
| prep_call_sampler | Source code |
| prepareInputData | Man page Source code |
| print.PMXStanFit | Source code |
| print.PMXStanModel | Source code |
| print.sbc | Man page Source code |
| print.simsummary | Man page Source code |
| print.stanfit | Man page Source code |
| quietgg | Man page Source code |
| r_scale | Source code |
| read_comments | Source code |
| read_csv_header | Source code |
| read_dso | Source code |
| read_model_from_con | Source code |
| read_one_stan_csv | Source code |
| read_rdump | Man page Source code |
| read_stan_csv | Man page Source code |
| real_is_integer | Source code |
| remove_empty_pars | Source code |
| rhat_rfun | Source code |
| rm_last_makefile | Source code |
| rm_rstan_makefile_flags | Source code |
| rsd.vs.pred | Man page Source code |
| rsd.vs.pred.PMXStanFit | Source code |
| rstan | Man page |
| rstan-internal | Man page |
| rstan-package | Man page |
| rstan-plotting-functions | Man page |
| rstan_ess | Source code |
| rstan_ess2_cpp | Source code |
| rstan_gg_options | Man page Source code |
| rstan_ggtheme_options | Man page Source code |
| rstan_options | Man page Source code |
| rstan_relist | Source code |
| rstan_seq_perm | Source code |
| rstan_splitrhat | Source code |
| rstan_splitrhat2_cpp | Source code |
| rstanplugin | Source code |
| rstanvis_aes_ops | Source code |
| rstanvis_hist_theme | Source code |
| rstanvis_multiparam_theme | Source code |
| rstanvis_theme | Source code |
| rstudio_stanc | Source code |
| sample_indices | Source code |
| sampler_param_matrix | Source code |
| sampler_param_vector | Source code |
| sampling | Man page |
| sampling,stanmodel-method | Man page Man page |
| sbc | Man page Source code |
| sbcFitFile | Source code |
| seq_array_ind | Source code |
| set_cppo | Man page Source code |
| set_makefile_flags | Source code |
| set_rstan_ggplot_defaults | Source code |
| sflist2stanfit | Man page Source code |
| should_return_NA | Source code |
| show,cxxdso-method | Man page |
| show,stanfit-method | Man page |
| show,stanmodel-method | Man page |
| split_chains | Source code |
| sqrfnames_to_dotfnames | Source code |
| stan | Man page Source code |
| stan_ac | Man page Source code |
| stan_demo | Man page Source code |
| stan_dens | Man page Source code |
| stan_diag | Man page Source code |
| stan_divergence | Source code |
| stan_ess | Man page Source code |
| stan_hist | Man page Source code |
| stan_mcse | Man page Source code |
| stan_model | Man page Source code |
| stan_par | Man page Source code |
| stan_plot | Man page Source code |
| stan_plot_inferences | Source code |
| stan_rdump | Man page Source code |
| stan_rhat | Man page Source code |
| stan_sample | Source code |
| stan_scat | Man page Source code |
| stan_stepsize | Source code |
| stan_trace | Man page Source code |
| stan_treedepth | Source code |
| stan_version | Man page Source code |
| stanc | Man page Source code |
| stanc_beta | Source code |
| stanc_builder | Man page Source code |
| stanfit | Man page |
| stanfit-class | Man page |
| stanmodel-class | Man page |
| summary,stanfit-method | Man page |
| summary_sim | Source code |
| summary_sim_ess | Source code |
| summary_sim_quan | Source code |
| summary_sim_rhat | Source code |
| system_info | Source code |
| test_221 | Source code |
| throw_sampler_warnings | Source code |
| traceplot | Man page |
| traceplot,stanfit-method | Man page |
| traces | Man page Source code |
| traces.PMXStanFit | Source code |
| u_scale | Source code |
| unconstrain_pars | Man page |
| unconstrain_pars,stanfit-method | Man page |
| unconstrain_pars_stanfit | Source code |
| unique_par | Source code |
| vb | Man page |
| vb,stanmodel-method | Man page |
| waic | Man page Source code |
| waic.PMXStanFit | Source code |
| writable_sample_file | Source code |
| z_scale | Source code |
