Man pages for stanette
R Interface to Stan
| As.mcmc.list | Create an mcmc.list from a stanfit object |
| check_hmc_diagnostics | Check HMC diagnostics after sampling |
| compile | Compilation of Stan code |
| copy | Replication of an existing 'PMXStanModel' object |
| d1_nm_poppk | simulated theophylline data |
| d2_nm_poppkpd | simulated theophylline data |
| d3_nm_idvpkpd | simulated theophylline data |
| expose_stan_functions | Expose user-defined Stan functions to R for testing and... |
| extract_sparse_parts | Extract the compressed representation of a sparse matrix |
| gofplot | Overall goodness-of-fit plots. |
| idv.obs.pred.vs.time | Comparison of the time profiles of observations with the... |
| instant.stan.extension | generate a customized NUTS-compatible ODE solver |
| lookup | Look up the Stan function that corresponds to a R function or... |
| makeconf_path | Obtain the full path of file 'Makeconf' |
| monitor | Compute summaries of MCMC draws and monitor convergence |
| nlist | Created named lists |
| obs.vs.pred | Pointwise comparison between observed data vs. predicted... |
| plotting-functions | RStan Plotting Functions |
| PMXStanFit | Generation of a 'PMXStanFit' object |
| PMXStanModel | Creation of a 'PMXStanModel' object |
| prepareInputData | Transformation of a NONMEM-readable dataset to a... |
| print.stanfit | Print a summary for a fitted model represented by a 'stanfit'... |
| read_rdump | Read data in an R dump file to a list |
| Rhat | Convergence and efficiency diagnostics for Markov Chains |
| rsd.vs.pred | Pointwise comparison between residuals vs. predicted medians. |
| rstan | RStan - the R interface to Stan |
| rstan-internal | Internal Functions and Methods |
| rstan_options | Set and read options used in RStan |
| sbc | Simulation Based Calibration (sbc) |
| set_cppo | Defunct function to set the compiler optimization level |
| sflist2stanfit | Merge a list of stanfit objects into one |
| stan | Fit a model with Stan |
| stanc | Translate Stan model specification to C++ code |
| stan_csv | Read CSV files of samples generated by (R)Stan into a... |
| stan_demo | Demonstrate examples included in Stan |
| stanfit2array-method | Create array, matrix, or data.frame objects from samples in a... |
| stanfit-class | Class 'stanfit': fitted Stan model |
| stanfit-method-extract | Extract samples from a fitted Stan model |
| stanfit-method-logprob | 'log_prob' and 'grad_log_prob' functions |
| stanfit-method-loo | Approximate leave-one-out cross-validation |
| stanfit-method-loo-moment-match | Moment matching for efficient approximate leave-one-out... |
| stanfit-method-pairs | Create a matrix of output plots from a 'stanfit' object |
| stanfit-method-plot | Plots for stanfit objects |
| stanfit-method-summary | Summary method for stanfit objects |
| stanfit-method-traceplot | Markov chain traceplots |
| stan_model | Construct a Stan model |
| stanmodel-class | Class representing model compiled from C++ |
| stanmodel-method-gqs | Draw samples of generated quantities from a Stan model |
| stanmodel-method-optimizing | Obtain a point estimate by maximizing the joint posterior |
| stanmodel-method-sampling | Draw samples from a Stan model |
| stanmodel-method-vb | Run Stan's variational algorithm for approximate posterior... |
| stan_plot | ggplot2 for RStan |
| stan_plot_diagnostics | RStan Diagnostic plots |
| stan_plot_options | Set default appearance options |
| stan_rdump | Dump the data for a Stan model to R dump file in the limited... |
| stan_version | Obtain the version of Stan |
| traces | Generation of trace plots of the samples |
| waic | Diagnostics for a fitted Bayesian model |
