Files in stanette
R Interface to 'Stan'

MD5
NAMESPACE
DESCRIPTION
R/sysdata.rda
R/InputData.R R/check_hmc_diagnostics.R R/extract_sparse_parts.R R/options.R R/expose_stan_functions.R R/stanfit-class.R R/git_rstan_head.R R/stan_plot_helpers.R R/plugin.R R/doctor_cppcode.R R/rstan.R R/PMXStanModel.R R/AllClass.R R/stan_plot.R R/data.R R/exposeStanClass.R R/PMXStanFit.R R/dynGet.R R/get_rng.R R/cxxdso-class.R R/makefile_op.R R/misc.R R/cxxfunplus.R R/stan_plot_options.R R/pairs.R R/get_stream.R R/lookup.R R/rstan_package_skeleton.R R/stan_csv.R R/Rcpp_module_def.R R/chains.R R/zzz.R R/monitor.R R/stanc.R R/StanTools.R R/loo.R R/stan_demo.R R/stanmodel-class.R R/instant.stan.extension.R R/gqs_light.R R/SBC.R
src/Makevars.win
src/Makevars
src/init.cpp
src/jj.c
src/jj.g.d_parser.c
src/stanc.cpp
src/Module.cpp
src/stan_fit_rccp.cpp
src/misc.cpp
src/stan_fit.cpp
src/pointer-tools.cpp
src/sparse_extractors.cpp
src/stan_fit_base.cpp
src/chains.cpp
src/d/util.c
src/d/arg.c
src/d/d.h
src/d/util.h
src/d/dparse_tree.h
src/d/write_tables.h
src/d/dparse_tables.h
src/d/dparse.h
src/d/parse.h
src/d/dparse_tree.c
src/d/scan.h
src/d/scan.c
src/d/D_BUILD_VERSION
src/d/read_binary.h
src/d/gram.h
src/d/README
src/d/lex.h
src/d/parse.c
src/d/lr.h
src/d/COPYRIGHT
src/d/arg.h
src/d/CHANGES
src/d/dsymtab.h
src/d/symtab.c
src/d/Makefile
src/stan/version.hpp
src/stan/io/random_var_context.hpp
src/stan/io/ends_with.hpp
src/stan/io/starts_with.hpp
src/stan/io/var_context.hpp
src/stan/io/stan_csv_reader.hpp
src/stan/io/array_var_context.hpp
src/stan/io/chained_var_context.hpp
src/stan/io/trim_spaces.hpp
src/stan/io/util.hpp
src/stan/io/dump.hpp
src/stan/io/writer.hpp
src/stan/io/is_whitespace.hpp
src/stan/io/empty_var_context.hpp
src/stan/io/read_line.hpp
src/stan/io/program_reader.hpp
src/stan/io/reader.hpp
src/stan/io/validate_zero_buf.hpp
src/stan/io/cmd_line.hpp
src/stan/lang/parser.hpp
src/stan/lang/compiler.hpp
src/stan/lang/generator.hpp
src/stan/lang/function_signatures.h
src/stan/lang/ast.hpp
src/stan/lang/rethrow_located.hpp
src/stan/lang/ast_def.cpp
src/stan/lang/compile_functions.hpp
src/stan/lang/generator/generate_standalone_functions.hpp
src/stan/lang/generator/generate_fun_inst_templ_params.hpp
src/stan/lang/generator/generate_write_block_var.hpp
src/stan/lang/generator/generate_data_var_init.hpp
src/stan/lang/generator/generate_write_array_method.hpp
src/stan/lang/generator/generate_function_inline_return_type.hpp
src/stan/lang/generator/generate_real_var_type.hpp
src/stan/lang/generator/generate_idxs.hpp
src/stan/lang/generator/constants.hpp
src/stan/lang/generator/generate_include.hpp
src/stan/lang/generator/get_typedef_var_type.hpp
src/stan/lang/generator/idx_visgen.hpp
src/stan/lang/generator/generate_indexed_expr_user.hpp
src/stan/lang/generator/generate_function_arguments.hpp
src/stan/lang/generator/generate_globals.hpp
src/stan/lang/generator/generate_unconstrained_param_names_method.hpp
src/stan/lang/generator/generate_member_var_decls_all.hpp
src/stan/lang/generator/generate_function_name.hpp
src/stan/lang/generator/generate_validate_var_decl.hpp
src/stan/lang/generator/generate_try.hpp
src/stan/lang/generator/generate_log_prob.hpp
src/stan/lang/generator/generate_read_transform_params.hpp
src/stan/lang/generator/generate_private_decl.hpp
src/stan/lang/generator/generate_expression.hpp
src/stan/lang/generator/write_var_idx_all_dims.hpp
src/stan/lang/generator/generate_function_instantiation.hpp
src/stan/lang/generator/generate_catch_throw_located.hpp
src/stan/lang/generator/generate_usings.hpp
src/stan/lang/generator/generate_constructor.hpp
src/stan/lang/generator/generate_line_number.hpp
src/stan/lang/generator/generate_quoted_string.hpp
src/stan/lang/generator/generate_idxs_user.hpp
src/stan/lang/generator/generate_var_constructor.hpp
src/stan/lang/generator/generate_initializer.hpp
src/stan/lang/generator/generate_typedefs.hpp
src/stan/lang/generator/is_numbered_statement_vis.hpp
src/stan/lang/generator/generate_function_functor.hpp
src/stan/lang/generator/generate_public_decl.hpp
src/stan/lang/generator/generate_function_instantiation_name.hpp
src/stan/lang/generator/write_var_idx_all_dims_msg.hpp
src/stan/lang/generator/generate_propto_default_function.hpp
src/stan/lang/generator/get_verbose_var_type.hpp
src/stan/lang/generator/generate_comment.hpp
src/stan/lang/generator/generate_function.hpp
src/stan/lang/generator/generate_constrained_param_names_method.hpp
src/stan/lang/generator/generate_idx_user.hpp
src/stan/lang/generator/generate_var_fill_define.hpp
src/stan/lang/generator/generate_block_var.hpp
src/stan/lang/generator/generate_using.hpp
src/stan/lang/generator/generate_set_param_ranges.hpp
src/stan/lang/generator/get_block_var_dims.hpp
src/stan/lang/generator/write_nested_resize_loop_begin.hpp
src/stan/lang/generator/generate_param_names_method.hpp
src/stan/lang/generator/generate_member_var_decls.hpp
src/stan/lang/generator/visgen.hpp
src/stan/lang/generator/write_resize_var_idx.hpp
src/stan/lang/generator/generate_statements.hpp
src/stan/lang/generator/idx_user_visgen.hpp
src/stan/lang/generator/generate_model_name_method.hpp
src/stan/lang/generator/generate_param_var.hpp
src/stan/lang/generator/write_begin_all_dims_row_maj_loop.hpp
src/stan/lang/generator/generate_cpp.hpp
src/stan/lang/generator/generate_validate_nonnegative.hpp
src/stan/lang/generator/write_end_loop.hpp
src/stan/lang/generator/generate_class_decl.hpp
src/stan/lang/generator/generate_functor_arguments.hpp
src/stan/lang/generator/generate_indent.hpp
src/stan/lang/generator/generate_version_comment.hpp
src/stan/lang/generator/generate_function_body.hpp
src/stan/lang/generator/generate_destructor.hpp
src/stan/lang/generator/generate_function_template_parameters.hpp
src/stan/lang/generator/generate_bare_type.hpp
src/stan/lang/generator/generate_functions.hpp
src/stan/lang/generator/generate_validate_tparam_inits.hpp
src/stan/lang/generator/fun_scalar_type.hpp
src/stan/lang/generator/generate_void_statement.hpp
src/stan/lang/generator/generate_function_instantiation_body.hpp
src/stan/lang/generator/generate_dims_method.hpp
src/stan/lang/generator/generate_idx.hpp
src/stan/lang/generator/write_begin_param_elements_loop.hpp
src/stan/lang/generator/write_begin_array_dims_loop.hpp
src/stan/lang/generator/expression_visgen.hpp
src/stan/lang/generator/generate_model_typedef.hpp
src/stan/lang/generator/generate_namespace_end.hpp
src/stan/lang/generator/generate_includes.hpp
src/stan/lang/generator/write_var_decl_type.hpp
src/stan/lang/generator/generate_indexed_expr.hpp
src/stan/lang/generator/generate_printable.hpp
src/stan/lang/generator/write_begin_all_dims_col_maj_loop.hpp
src/stan/lang/generator/generate_local_var_decl_inits.hpp
src/stan/lang/generator/generate_arg_decl.hpp
src/stan/lang/generator/write_var_decl_arg.hpp
src/stan/lang/generator/generate_using_namespace.hpp
src/stan/lang/generator/generate_usings_standalone_functions.hpp
src/stan/lang/generator/generate_param_names_array.hpp
src/stan/lang/generator/generate_register_mpi.hpp
src/stan/lang/generator/generate_class_decl_end.hpp
src/stan/lang/generator/generate_validate_context_size.hpp
src/stan/lang/generator/generate_typedef.hpp
src/stan/lang/generator/generate_validate_var_dims.hpp
src/stan/lang/generator/generate_unconstrained_param_names_array.hpp
src/stan/lang/generator/write_var_idx_array_dims.hpp
src/stan/lang/generator/generate_quoted_expression.hpp
src/stan/lang/generator/generate_transform_inits_method.hpp
src/stan/lang/generator/generate_function_instantiations.hpp
src/stan/lang/generator/generate_validate_block_var.hpp
src/stan/lang/generator/printable_visgen.hpp
src/stan/lang/generator/generate_program_reader_fun.hpp
src/stan/lang/generator/generate_namespace_start.hpp
src/stan/lang/generator/generate_array_builder_adds.hpp
src/stan/lang/generator/write_constraints_fn.hpp
src/stan/lang/generator/statement_visgen.hpp
src/stan/lang/generator/generate_data_var_ctor.hpp
src/stan/lang/generator/generate_propto_default_function_body.hpp
src/stan/lang/generator/generate_statement.hpp
src/stan/lang/grammars/local_var_decls_grammar.hpp
src/stan/lang/grammars/statement_2_grammar_def.hpp
src/stan/lang/grammars/expression07_grammar_inst.cpp
src/stan/lang/grammars/whitespace_grammar_def.hpp
src/stan/lang/grammars/term_grammar.hpp
src/stan/lang/grammars/whitespace_grammar_inst.cpp
src/stan/lang/grammars/program_grammar.hpp
src/stan/lang/grammars/whitespace_grammar.hpp
src/stan/lang/grammars/statement_2_grammar.hpp
src/stan/lang/grammars/block_var_decls_grammar_def.hpp
src/stan/lang/grammars/indexes_grammar_inst.cpp
src/stan/lang/grammars/expression_grammar_inst.cpp
src/stan/lang/grammars/expression_grammar.hpp
src/stan/lang/grammars/statement_grammar_def.hpp
src/stan/lang/grammars/functions_grammar_inst.cpp
src/stan/lang/grammars/bare_type_grammar_def.hpp
src/stan/lang/grammars/indexes_grammar_def.hpp
src/stan/lang/grammars/indexes_grammar.hpp
src/stan/lang/grammars/block_var_decls_grammar.hpp
src/stan/lang/grammars/iterator_typedefs.hpp
src/stan/lang/grammars/statement_2_grammar_inst.cpp
src/stan/lang/grammars/block_var_decls_grammar_inst.cpp
src/stan/lang/grammars/statement_grammar_inst.cpp
src/stan/lang/grammars/bare_type_grammar.hpp
src/stan/lang/grammars/statement_grammar.hpp
src/stan/lang/grammars/term_grammar_inst.cpp
src/stan/lang/grammars/bare_type_grammar_inst.cpp
src/stan/lang/grammars/functions_grammar_def.hpp
src/stan/lang/grammars/semantic_actions.hpp
src/stan/lang/grammars/program_grammar_inst.cpp
src/stan/lang/grammars/semantic_actions_def.cpp
src/stan/lang/grammars/expression07_grammar.hpp
src/stan/lang/grammars/expression07_grammar_def.hpp
src/stan/lang/grammars/functions_grammar.hpp
src/stan/lang/grammars/program_grammar_def.hpp
src/stan/lang/grammars/expression_grammar_def.hpp
src/stan/lang/grammars/common_adaptors_def.hpp
src/stan/lang/grammars/local_var_decls_grammar_def.hpp
src/stan/lang/grammars/local_var_decls_grammar_inst.cpp
src/stan/lang/grammars/term_grammar_def.hpp
src/stan/lang/ast/origin_block.hpp
src/stan/lang/ast/scope.hpp
src/stan/lang/ast/variable_map.hpp
src/stan/lang/ast/scope_def.hpp
src/stan/lang/ast/nil.hpp
src/stan/lang/ast/variable_map_def.hpp
src/stan/lang/ast/type/void_type.hpp
src/stan/lang/ast/type/row_vector_type_def.hpp
src/stan/lang/ast/type/row_vector_local_type_def.hpp
src/stan/lang/ast/type/local_var_type.hpp
src/stan/lang/ast/type/local_array_type.hpp
src/stan/lang/ast/type/cholesky_factor_corr_block_type.hpp
src/stan/lang/ast/type/simplex_block_type_def.hpp
src/stan/lang/ast/type/ill_formed_type_def.hpp
src/stan/lang/ast/type/cholesky_factor_cov_block_type.hpp
src/stan/lang/ast/type/order_id.hpp
src/stan/lang/ast/type/double_block_type.hpp
src/stan/lang/ast/type/block_var_type.hpp
src/stan/lang/ast/type/matrix_local_type.hpp
src/stan/lang/ast/type/double_type.hpp
src/stan/lang/ast/type/double_type_def.hpp
src/stan/lang/ast/type/ordered_block_type.hpp
src/stan/lang/ast/type/vector_type_def.hpp
src/stan/lang/ast/type/unit_vector_block_type.hpp
src/stan/lang/ast/type/int_block_type.hpp
src/stan/lang/ast/type/cov_matrix_block_type_def.hpp
src/stan/lang/ast/type/vector_local_type.hpp
src/stan/lang/ast/type/block_array_type.hpp
src/stan/lang/ast/type/matrix_block_type_def.hpp
src/stan/lang/ast/type/unit_vector_block_type_def.hpp
src/stan/lang/ast/type/corr_matrix_block_type_def.hpp
src/stan/lang/ast/type/corr_matrix_block_type.hpp
src/stan/lang/ast/type/local_array_type_def.hpp
src/stan/lang/ast/type/row_vector_type.hpp
src/stan/lang/ast/type/matrix_type.hpp
src/stan/lang/ast/type/vector_type.hpp
src/stan/lang/ast/type/bare_expr_type_def.hpp
src/stan/lang/ast/type/positive_ordered_block_type_def.hpp
src/stan/lang/ast/type/matrix_type_def.hpp
src/stan/lang/ast/type/int_type_def.hpp
src/stan/lang/ast/type/row_vector_block_type.hpp
src/stan/lang/ast/type/row_vector_block_type_def.hpp
src/stan/lang/ast/type/vector_local_type_def.hpp
src/stan/lang/ast/type/cov_matrix_block_type.hpp
src/stan/lang/ast/type/bare_array_type_def.hpp
src/stan/lang/ast/type/void_type_def.hpp
src/stan/lang/ast/type/matrix_local_type_def.hpp
src/stan/lang/ast/type/cholesky_factor_cov_block_type_def.hpp
src/stan/lang/ast/type/local_var_type_def.hpp
src/stan/lang/ast/type/bare_array_type.hpp
src/stan/lang/ast/type/ill_formed_type.hpp
src/stan/lang/ast/type/bare_expr_type.hpp
src/stan/lang/ast/type/block_array_type_def.hpp
src/stan/lang/ast/type/block_var_type_def.hpp
src/stan/lang/ast/type/double_block_type_def.hpp
src/stan/lang/ast/type/int_block_type_def.hpp
src/stan/lang/ast/type/simplex_block_type.hpp
src/stan/lang/ast/type/positive_ordered_block_type.hpp
src/stan/lang/ast/type/row_vector_local_type.hpp
src/stan/lang/ast/type/int_type.hpp
src/stan/lang/ast/type/vector_block_type.hpp
src/stan/lang/ast/type/matrix_block_type.hpp
src/stan/lang/ast/type/vector_block_type_def.hpp
src/stan/lang/ast/type/ordered_block_type_def.hpp
src/stan/lang/ast/type/cholesky_factor_corr_block_type_def.hpp
src/stan/lang/ast/node/integrate_1d.hpp
src/stan/lang/ast/node/omni_idx_def.hpp
src/stan/lang/ast/node/offset_multiplier_def.hpp
src/stan/lang/ast/node/integrate_ode_def.hpp
src/stan/lang/ast/node/integrate_ode.hpp
src/stan/lang/ast/node/multi_idx.hpp
src/stan/lang/ast/node/local_var_decl_def.hpp
src/stan/lang/ast/node/function_decl_defs.hpp
src/stan/lang/ast/node/index_op_sliced.hpp
src/stan/lang/ast/node/assgn_def.hpp
src/stan/lang/ast/node/offset_multiplier.hpp
src/stan/lang/ast/node/variable_dims_def.hpp
src/stan/lang/ast/node/idx.hpp
src/stan/lang/ast/node/for_array_statement_def.hpp
src/stan/lang/ast/node/break_continue_statement.hpp
src/stan/lang/ast/node/multi_idx_def.hpp
src/stan/lang/ast/node/for_array_statement.hpp
src/stan/lang/ast/node/for_statement_def.hpp
src/stan/lang/ast/node/map_rect_def.hpp
src/stan/lang/ast/node/conditional_op_def.hpp
src/stan/lang/ast/node/lub_idx.hpp
src/stan/lang/ast/node/distribution.hpp
src/stan/lang/ast/node/algebra_solver.hpp
src/stan/lang/ast/node/idx_def.hpp
src/stan/lang/ast/node/lb_idx_def.hpp
src/stan/lang/ast/node/return_statement_def.hpp
src/stan/lang/ast/node/printable.hpp
src/stan/lang/ast/node/print_statement_def.hpp
src/stan/lang/ast/node/var_decl.hpp
src/stan/lang/ast/node/range_def.hpp
src/stan/lang/ast/node/double_literal_def.hpp
src/stan/lang/ast/node/int_literal_def.hpp
src/stan/lang/ast/node/statements.hpp
src/stan/lang/ast/node/block_var_decl.hpp
src/stan/lang/ast/node/array_expr_def.hpp
src/stan/lang/ast/node/unary_op.hpp
src/stan/lang/ast/node/while_statement.hpp
src/stan/lang/ast/node/expression.hpp
src/stan/lang/ast/node/algebra_solver_control_def.hpp
src/stan/lang/ast/node/while_statement_def.hpp
src/stan/lang/ast/node/index_op.hpp
src/stan/lang/ast/node/conditional_op.hpp
src/stan/lang/ast/node/function_decl_def.hpp
src/stan/lang/ast/node/integrate_ode_control_def.hpp
src/stan/lang/ast/node/print_statement.hpp
src/stan/lang/ast/node/double_literal.hpp
src/stan/lang/ast/node/return_statement.hpp
src/stan/lang/ast/node/reject_statement.hpp
src/stan/lang/ast/node/statements_def.hpp
src/stan/lang/ast/node/fun_def.hpp
src/stan/lang/ast/node/program_def.hpp
src/stan/lang/ast/node/conditional_statement.hpp
src/stan/lang/ast/node/unary_op_def.hpp
src/stan/lang/ast/node/for_matrix_statement.hpp
src/stan/lang/ast/node/increment_log_prob_statement.hpp
src/stan/lang/ast/node/variable.hpp
src/stan/lang/ast/node/ub_idx.hpp
src/stan/lang/ast/node/increment_log_prob_statement_def.hpp
src/stan/lang/ast/node/sample.hpp
src/stan/lang/ast/node/range.hpp
src/stan/lang/ast/node/array_expr.hpp
src/stan/lang/ast/node/program.hpp
src/stan/lang/ast/node/var_decl_def.hpp
src/stan/lang/ast/node/assgn.hpp
src/stan/lang/ast/node/index_op_def.hpp
src/stan/lang/ast/node/variable_dims.hpp
src/stan/lang/ast/node/algebra_solver_control.hpp
src/stan/lang/ast/node/for_statement.hpp
src/stan/lang/ast/node/binary_op.hpp
src/stan/lang/ast/node/lub_idx_def.hpp
src/stan/lang/ast/node/uni_idx_def.hpp
src/stan/lang/ast/node/sample_def.hpp
src/stan/lang/ast/node/function_decl_def_def.hpp
src/stan/lang/ast/node/matrix_expr_def.hpp
src/stan/lang/ast/node/row_vector_expr_def.hpp
src/stan/lang/ast/node/int_literal.hpp
src/stan/lang/ast/node/for_matrix_statement_def.hpp
src/stan/lang/ast/node/lb_idx.hpp
src/stan/lang/ast/node/integrate_ode_control.hpp
src/stan/lang/ast/node/statement.hpp
src/stan/lang/ast/node/integrate_1d_def.hpp
src/stan/lang/ast/node/reject_statement_def.hpp
src/stan/lang/ast/node/conditional_statement_def.hpp
src/stan/lang/ast/node/function_decl_defs_def.hpp
src/stan/lang/ast/node/break_continue_statement_def.hpp
src/stan/lang/ast/node/block_var_decl_def.hpp
src/stan/lang/ast/node/local_var_decl.hpp
src/stan/lang/ast/node/map_rect.hpp
src/stan/lang/ast/node/no_op_statement.hpp
src/stan/lang/ast/node/uni_idx.hpp
src/stan/lang/ast/node/ub_idx_def.hpp
src/stan/lang/ast/node/expression_def.hpp
src/stan/lang/ast/node/printable_def.hpp
src/stan/lang/ast/node/binary_op_def.hpp
src/stan/lang/ast/node/algebra_solver_def.hpp
src/stan/lang/ast/node/matrix_expr.hpp
src/stan/lang/ast/node/statement_def.hpp
src/stan/lang/ast/node/fun.hpp
src/stan/lang/ast/node/row_vector_expr.hpp
src/stan/lang/ast/node/omni_idx.hpp
src/stan/lang/ast/node/variable_def.hpp
src/stan/lang/ast/node/index_op_sliced_def.hpp
src/stan/lang/ast/sigs/function_signatures.hpp
src/stan/lang/ast/sigs/function_signature_t.hpp
src/stan/lang/ast/sigs/function_signatures_def.hpp
src/stan/lang/ast/fun/write_block_var_type.hpp
src/stan/lang/ast/fun/write_expression_vis.hpp
src/stan/lang/ast/fun/write_bare_expr_type_def.hpp
src/stan/lang/ast/fun/has_var_vis_def.hpp
src/stan/lang/ast/fun/strip_cdf_suffix.hpp
src/stan/lang/ast/fun/indexed_type_def.hpp
src/stan/lang/ast/fun/ends_with.hpp
src/stan/lang/ast/fun/write_idx_vis.hpp
src/stan/lang/ast/fun/infer_type_indexing.hpp
src/stan/lang/ast/fun/has_prob_fun_suffix_def.hpp
src/stan/lang/ast/fun/get_ccdf_def.hpp
src/stan/lang/ast/fun/bare_type_is_data_vis_def.hpp
src/stan/lang/ast/fun/get_ccdf.hpp
src/stan/lang/ast/fun/bare_type_is_data_vis.hpp
src/stan/lang/ast/fun/is_assignable.hpp
src/stan/lang/ast/fun/var_type_name_vis_def.hpp
src/stan/lang/ast/fun/num_index_op_dims_def.hpp
src/stan/lang/ast/fun/strip_cdf_suffix_def.hpp
src/stan/lang/ast/fun/is_nonempty.hpp
src/stan/lang/ast/fun/strip_prob_fun_suffix.hpp
src/stan/lang/ast/fun/has_non_param_var_vis.hpp
src/stan/lang/ast/fun/get_prob_fun.hpp
src/stan/lang/ast/fun/is_space_def.hpp
src/stan/lang/ast/fun/is_nil_vis.hpp
src/stan/lang/ast/fun/block_type_params_total_vis.hpp
src/stan/lang/ast/fun/ends_with_def.hpp
src/stan/lang/ast/fun/generate_expression.hpp
src/stan/lang/ast/fun/is_nil.hpp
src/stan/lang/ast/fun/is_nil_vis_def.hpp
src/stan/lang/ast/fun/strip_ccdf_suffix_def.hpp
src/stan/lang/ast/fun/has_var.hpp
src/stan/lang/ast/fun/returns_type_vis.hpp
src/stan/lang/ast/fun/has_var_def.hpp
src/stan/lang/ast/fun/print_scope_def.hpp
src/stan/lang/ast/fun/write_idx_vis_def.hpp
src/stan/lang/ast/fun/get_cdf.hpp
src/stan/lang/ast/fun/expression_bare_type_vis.hpp
src/stan/lang/ast/fun/num_index_op_dims.hpp
src/stan/lang/ast/fun/strip_ccdf_suffix.hpp
src/stan/lang/ast/fun/var_occurs_vis.hpp
src/stan/lang/ast/fun/bare_type_vis.hpp
src/stan/lang/ast/fun/has_lp_suffix.hpp
src/stan/lang/ast/fun/has_cdf_suffix.hpp
src/stan/lang/ast/fun/infer_type_indexing_def.hpp
src/stan/lang/ast/fun/get_prob_fun_def.hpp
src/stan/lang/ast/fun/block_type_bounds_vis.hpp
src/stan/lang/ast/fun/bare_type_set_is_data_vis.hpp
src/stan/lang/ast/fun/get_cdf_def.hpp
src/stan/lang/ast/fun/strip_prob_fun_suffix_def.hpp
src/stan/lang/ast/fun/template.hpp
src/stan/lang/ast/fun/bare_type_total_dims_vis.hpp
src/stan/lang/ast/fun/print_scope.hpp
src/stan/lang/ast/fun/block_type_is_specialized_vis.hpp
src/stan/lang/ast/fun/block_type_params_total_vis_def.hpp
src/stan/lang/ast/fun/write_bare_expr_type.hpp
src/stan/lang/ast/fun/expression_bare_type_vis_def.hpp
src/stan/lang/ast/fun/block_type_offset_multiplier_vis_def.hpp
src/stan/lang/ast/fun/var_type_arg1_vis_def.hpp
src/stan/lang/ast/fun/var_type_arg2_vis.hpp
src/stan/lang/ast/fun/write_expression_vis_def.hpp
src/stan/lang/ast/fun/block_type_offset_multiplier_vis.hpp
src/stan/lang/ast/fun/is_no_op_statement_vis_def.hpp
src/stan/lang/ast/fun/is_user_defined_def.hpp
src/stan/lang/ast/fun/has_ccdf_suffix_def.hpp
src/stan/lang/ast/fun/is_assignable_def.hpp
src/stan/lang/ast/fun/is_multi_index_vis.hpp
src/stan/lang/ast/fun/block_type_is_specialized_vis_def.hpp
src/stan/lang/ast/fun/var_type_arg1_vis.hpp
src/stan/lang/ast/fun/fun_name_exists_def.hpp
src/stan/lang/ast/fun/has_non_param_var_def.hpp
src/stan/lang/ast/fun/returns_type_def.hpp
src/stan/lang/ast/fun/is_space.hpp
src/stan/lang/ast/fun/has_rng_suffix_def.hpp
src/stan/lang/ast/fun/is_multi_index.hpp
src/stan/lang/ast/fun/var_occurs_vis_def.hpp
src/stan/lang/ast/fun/bare_type_vis_def.hpp
src/stan/lang/ast/fun/is_user_defined.hpp
src/stan/lang/ast/fun/has_var_vis.hpp
src/stan/lang/ast/fun/is_nonempty_def.hpp
src/stan/lang/ast/fun/is_multi_index_vis_def.hpp
src/stan/lang/ast/fun/fun_name_exists.hpp
src/stan/lang/ast/fun/var_type_name_vis.hpp
src/stan/lang/ast/fun/has_non_param_var.hpp
src/stan/lang/ast/fun/bare_type_total_dims_vis_def.hpp
src/stan/lang/ast/fun/promote_primitive.hpp
src/stan/lang/ast/fun/block_type_bounds_vis_def.hpp
src/stan/lang/ast/fun/has_non_param_var_vis_def.hpp
src/stan/lang/ast/fun/has_rng_suffix.hpp
src/stan/lang/ast/fun/var_type_arg2_vis_def.hpp
src/stan/lang/ast/fun/is_no_op_statement_vis.hpp
src/stan/lang/ast/fun/has_lp_suffix_def.hpp
src/stan/lang/ast/fun/is_user_defined_prob_function.hpp
src/stan/lang/ast/fun/bare_type_order_id_vis_def.hpp
src/stan/lang/ast/fun/indexed_type.hpp
src/stan/lang/ast/fun/has_prob_fun_suffix.hpp
src/stan/lang/ast/fun/promote_primitive_def.hpp
src/stan/lang/ast/fun/is_user_defined_prob_function_def.hpp
src/stan/lang/ast/fun/bare_type_order_id_vis.hpp
src/stan/lang/ast/fun/bare_type_set_is_data_vis_def.hpp
src/stan/lang/ast/fun/returns_type.hpp
src/stan/lang/ast/fun/is_nil_def.hpp
src/stan/lang/ast/fun/is_multi_index_def.hpp
src/stan/lang/ast/fun/write_block_var_type_def.hpp
src/stan/lang/ast/fun/has_ccdf_suffix.hpp
src/stan/lang/ast/fun/returns_type_vis_def.hpp
src/stan/lang/ast/fun/has_cdf_suffix_def.hpp
src/stan/command/stanc_helper.hpp
src/stan/model/prob_grad.hpp
src/stan/model/model_header.hpp
src/stan/model/hessian_times_vector.hpp
src/stan/model/log_prob_propto.hpp
src/stan/model/hessian.hpp
src/stan/model/model_functional.hpp
src/stan/model/standalone_functions_header.hpp
src/stan/model/finite_diff_grad.hpp
src/stan/model/gradient.hpp
src/stan/model/indexing.hpp
src/stan/model/model_base_crtp.hpp
src/stan/model/grad_hess_log_prob.hpp
src/stan/model/model_base.hpp
src/stan/model/log_prob_grad.hpp
src/stan/model/grad_tr_mat_times_hessian.hpp
src/stan/model/gradient_dot_vector.hpp
src/stan/model/test_gradients.hpp
src/stan/model/indexing/rvalue_return.hpp
src/stan/model/indexing/index_list.hpp
src/stan/model/indexing/deep_copy.hpp
src/stan/model/indexing/lvalue.hpp
src/stan/model/indexing/rvalue.hpp
src/stan/model/indexing/index.hpp
src/stan/model/indexing/rvalue_index_size.hpp
src/stan/model/indexing/rvalue_at.hpp
src/stan/mcmc/fixed_param_sampler.hpp
src/stan/mcmc/stepsize_covar_adapter.hpp
src/stan/mcmc/base_adapter.hpp
src/stan/mcmc/stepsize_adapter.hpp
src/stan/mcmc/stepsize_var_adapter.hpp
src/stan/mcmc/covar_adaptation.hpp
src/stan/mcmc/base_adaptation.hpp
src/stan/mcmc/var_adaptation.hpp
src/stan/mcmc/chains.hpp
src/stan/mcmc/sample.hpp
src/stan/mcmc/windowed_adaptation.hpp
src/stan/mcmc/stepsize_adaptation.hpp
src/stan/mcmc/base_mcmc.hpp
src/stan/mcmc/hmc/base_hmc.hpp
src/stan/mcmc/hmc/static_uniform/adapt_softabs_static_uniform.hpp
src/stan/mcmc/hmc/static_uniform/softabs_static_uniform.hpp
src/stan/mcmc/hmc/static_uniform/dense_e_static_uniform.hpp
src/stan/mcmc/hmc/static_uniform/adapt_diag_e_static_uniform.hpp
src/stan/mcmc/hmc/static_uniform/base_static_uniform.hpp
src/stan/mcmc/hmc/static_uniform/adapt_unit_e_static_uniform.hpp
src/stan/mcmc/hmc/static_uniform/unit_e_static_uniform.hpp
src/stan/mcmc/hmc/static_uniform/adapt_dense_e_static_uniform.hpp
src/stan/mcmc/hmc/static_uniform/diag_e_static_uniform.hpp
src/stan/mcmc/hmc/integrators/base_integrator.hpp
src/stan/mcmc/hmc/integrators/base_leapfrog.hpp
src/stan/mcmc/hmc/integrators/expl_leapfrog.hpp
src/stan/mcmc/hmc/integrators/impl_leapfrog.hpp
src/stan/mcmc/hmc/nuts/dense_e_nuts.hpp
src/stan/mcmc/hmc/nuts/adapt_unit_e_nuts.hpp
src/stan/mcmc/hmc/nuts/adapt_softabs_nuts.hpp
src/stan/mcmc/hmc/nuts/unit_e_nuts.hpp
src/stan/mcmc/hmc/nuts/base_nuts.hpp
src/stan/mcmc/hmc/nuts/softabs_nuts.hpp
src/stan/mcmc/hmc/nuts/adapt_dense_e_nuts.hpp
src/stan/mcmc/hmc/nuts/adapt_diag_e_nuts.hpp
src/stan/mcmc/hmc/nuts/diag_e_nuts.hpp
src/stan/mcmc/hmc/static/unit_e_static_hmc.hpp
src/stan/mcmc/hmc/static/diag_e_static_hmc.hpp
src/stan/mcmc/hmc/static/adapt_dense_e_static_hmc.hpp
src/stan/mcmc/hmc/static/dense_e_static_hmc.hpp
src/stan/mcmc/hmc/static/softabs_static_hmc.hpp
src/stan/mcmc/hmc/static/adapt_diag_e_static_hmc.hpp
src/stan/mcmc/hmc/static/adapt_unit_e_static_hmc.hpp
src/stan/mcmc/hmc/static/base_static_hmc.hpp
src/stan/mcmc/hmc/static/adapt_softabs_static_hmc.hpp
src/stan/mcmc/hmc/xhmc/diag_e_xhmc.hpp
src/stan/mcmc/hmc/xhmc/adapt_dense_e_xhmc.hpp
src/stan/mcmc/hmc/xhmc/unit_e_xhmc.hpp
src/stan/mcmc/hmc/xhmc/softabs_xhmc.hpp
src/stan/mcmc/hmc/xhmc/base_xhmc.hpp
src/stan/mcmc/hmc/xhmc/adapt_diag_e_xhmc.hpp
src/stan/mcmc/hmc/xhmc/dense_e_xhmc.hpp
src/stan/mcmc/hmc/xhmc/adapt_softabs_xhmc.hpp
src/stan/mcmc/hmc/xhmc/adapt_unit_e_xhmc.hpp
src/stan/mcmc/hmc/nuts_classic/adapt_dense_e_nuts_classic.hpp
src/stan/mcmc/hmc/nuts_classic/adapt_unit_e_nuts_classic.hpp
src/stan/mcmc/hmc/nuts_classic/base_nuts_classic.hpp
src/stan/mcmc/hmc/nuts_classic/adapt_diag_e_nuts_classic.hpp
src/stan/mcmc/hmc/nuts_classic/diag_e_nuts_classic.hpp
src/stan/mcmc/hmc/nuts_classic/unit_e_nuts_classic.hpp
src/stan/mcmc/hmc/nuts_classic/dense_e_nuts_classic.hpp
src/stan/mcmc/hmc/hamiltonians/unit_e_point.hpp
src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp
src/stan/mcmc/hmc/hamiltonians/ps_point.hpp
src/stan/mcmc/hmc/hamiltonians/diag_e_point.hpp
src/stan/mcmc/hmc/hamiltonians/dense_e_point.hpp
src/stan/mcmc/hmc/hamiltonians/base_hamiltonian.hpp
src/stan/mcmc/hmc/hamiltonians/softabs_point.hpp
src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp
src/stan/mcmc/hmc/hamiltonians/unit_e_metric.hpp
src/stan/mcmc/hmc/hamiltonians/softabs_metric.hpp
src/stan/services/error_codes.hpp
src/stan/services/util/gq_writer.hpp
src/stan/services/util/create_unit_e_diag_inv_metric.hpp
src/stan/services/util/run_adaptive_sampler.hpp
src/stan/services/util/validate_diag_inv_metric.hpp
src/stan/services/util/validate_dense_inv_metric.hpp
src/stan/services/util/read_dense_inv_metric.hpp
src/stan/services/util/generate_transitions.hpp
src/stan/services/util/mcmc_writer.hpp
src/stan/services/util/inv_metric.hpp
src/stan/services/util/read_diag_inv_metric.hpp
src/stan/services/util/experimental_message.hpp
src/stan/services/util/create_rng.hpp
src/stan/services/util/create_unit_e_dense_inv_metric.hpp
src/stan/services/util/run_sampler.hpp
src/stan/services/util/initialize.hpp
src/stan/services/experimental/advi/meanfield.hpp
src/stan/services/experimental/advi/fullrank.hpp
src/stan/services/experimental/advi/defaults.hpp
src/stan/services/diagnose/defaults.hpp
src/stan/services/diagnose/diagnose.hpp
src/stan/services/optimize/newton.hpp
src/stan/services/optimize/bfgs.hpp
src/stan/services/optimize/defaults.hpp
src/stan/services/optimize/lbfgs.hpp
src/stan/services/sample/fixed_param.hpp
src/stan/services/sample/standalone_gqs.hpp
src/stan/services/sample/hmc_static_dense_e_adapt.hpp
src/stan/services/sample/hmc_nuts_unit_e_adapt.hpp
src/stan/services/sample/hmc_nuts_diag_e.hpp
src/stan/services/sample/defaults.hpp
src/stan/services/sample/hmc_nuts_diag_e_adapt.hpp
src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp
src/stan/services/sample/hmc_static_diag_e.hpp
src/stan/services/sample/hmc_static_dense_e.hpp
src/stan/services/sample/hmc_nuts_unit_e.hpp
src/stan/services/sample/hmc_static_unit_e.hpp
src/stan/services/sample/hmc_static_diag_e_adapt.hpp
src/stan/services/sample/hmc_nuts_dense_e.hpp
src/stan/services/sample/hmc_static_unit_e_adapt.hpp
src/stan/variational/base_family.hpp
src/stan/variational/advi.hpp
src/stan/variational/print_progress.hpp
src/stan/variational/families/normal_meanfield.hpp
src/stan/variational/families/normal_fullrank.hpp
src/stan/optimization/bfgs_linesearch.hpp
src/stan/optimization/newton.hpp
src/stan/optimization/lbfgs_update.hpp
src/stan/optimization/bfgs.hpp
src/stan/optimization/bfgs_update.hpp
src/stan/callbacks/logger.hpp
src/stan/callbacks/stream_writer.hpp
src/stan/callbacks/interrupt.hpp
src/stan/callbacks/tee_writer.hpp
src/stan/callbacks/writer.hpp
src/stan/callbacks/stream_logger.hpp
src/stan/analyze/mcmc/compute_potential_scale_reduction.hpp
src/stan/analyze/mcmc/compute_effective_sample_size.hpp
src/stan/analyze/mcmc/split_chains.hpp
src/stan/analyze/mcmc/autocovariance.hpp
inst/NEWS
inst/CITATION
inst/include/generic_ode_interface_template_multi_state.txt
inst/include/generic_ode_interface_template.txt
inst/include/exporter.h
inst/include/generic_ode_interface_template_cov.txt
inst/include/rstan_next/stan_fit.hpp
inst/include/rstan_next/stan_fit_base.hpp
inst/include/stan/math_ww.hpp
inst/include/stan/math.hpp
inst/include/stan/math_old.hpp
inst/include/stan/math/PMXStan/PKPDLib_WW.hpp
inst/include/stan/math/PMXStan/lsoda_tmpl_class.hpp
inst/include/stan/math/PMXStan/generic_ode_interface.hpp
inst/include/stan/math/PMXStan/examples/test_cmt/test_cls_form1.stan
inst/include/stan/math/PMXStan/examples/test_cmt/test_cls_form1.RData
inst/include/stan/math/PMXStan/examples/test_cmt/test_cls_form1.R
inst/include/stan/math/PMXStan/examples/test_ode/ode1.stan
inst/include/stan/math/PMXStan/examples/test_ode/ode1.data.R inst/include/stan/math/PMXStan/examples/test_ode/ode1_gof.R
inst/include/rstan/rstaninc.hpp
inst/include/rstan/logger.hpp
inst/include/rstan/stan_args.hpp
inst/include/rstan/rstan_writer.hpp
inst/include/rstan/stan_fit.hpp
inst/include/rstan/sum_values.hpp
inst/include/rstan/boost_random_R.hpp
inst/include/rstan/comment_writer.hpp
inst/include/rstan/filtered_values.hpp
inst/include/rstan/rcpp_module_def_for_rstan.hpp
inst/include/rstan/value.hpp
inst/include/rstan/values.hpp
inst/include/rstan/io/r_ostream.hpp
inst/include/rstan/io/rlist_ref_var_context.hpp
inst/misc/rstan_doc_ex_2.csv
inst/misc/stan_progress.html
inst/misc/rstan_doc_ex_3.csv
inst/misc/rstan_doc_ex_incomplete_2.csv
inst/misc/rstan_doc_ex_4.csv
inst/misc/rstan_doc_ex_1.csv
inst/misc/rstan_doc_ex_incomplete_1.csv
data/examples_data.rda
tools/stan-functions.R
tools/stan-functions.txt
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