stepwise: Stepwise detection of recombination breakpoints
Version 0.3

A stepwise approach to identifying recombination breakpoints in a sequence alignment.

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AuthorJinko Graham <jgraham@stat.sfu.ca>, Brad McNeney <mcneney@sfu.ca>, Francoise Seillier-Moiseiwitsch <seillier@math.umbc.edu>, R interface by Sigal Blay <sblay@sfu.ca>
Date of publication2012-11-24 08:11:17
MaintainerBrad McNeney <mcneney@stat.sfu.ca>
LicenseGPL (>= 2)
Version0.3
URL http://stat.sfu.ca/statgen/research/stepwise.html
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("stepwise")

Man pages

maxchi: Stepwise detection of recombination breakpoints using MaxChi
phylpro: Stepwise detection of recombination breakpoints using Phylpro
stepwise-internal: Internal stepwise functions
stepwise.seqs: Simulated sequence alignment from the stepwise package
summary.maxchi: Summary of a maxchi object
summary.phylpro: Summary of a phylpro object

Functions

maxchi Man page
phylpro Man page
print.pair Man page
stepwise Man page
stepwise-internal Man page
stepwise.seqs Man page
summary.maxchi Man page
summary.phylpro Man page

Files

MD5
R
R/print.pair.R
R/phylpro.R
R/maxchi.R
R/summary.phylpro.R
R/summary.maxchi.R
DESCRIPTION
NAMESPACE
src
src/init.c
src/getMaxChi.c
src/stepwise.c
src/getMaxChi.h
src/Rphylpro.c
src/getPhylpro.c
src/Rmaxchi.c
src/Phylpro.c
src/init.h
src/MaxChi.c
src/getPhylpro.h
data
data/stepwise.seqs.RData
demo
demo/00Index
demo/phylpro.R
demo/maxchi.R
inst
inst/CITATION
inst/doc
inst/doc/docu.pdf
inst/extdata
inst/extdata/stepwise.seqs.R
inst/extdata/simulinfile.txt
man
man/summary.phylpro.Rd
man/stepwise.seqs.Rd
man/maxchi.Rd
man/phylpro.Rd
man/stepwise-internal.Rd
man/summary.maxchi.Rd
stepwise documentation built on May 29, 2017, 9:54 p.m.