stepwise: Stepwise detection of recombination breakpoints

A stepwise approach to identifying recombination breakpoints in a sequence alignment.

Install the latest version of this package by entering the following in R:
install.packages("stepwise")
AuthorJinko Graham <jgraham@stat.sfu.ca>, Brad McNeney <mcneney@sfu.ca>, Francoise Seillier-Moiseiwitsch <seillier@math.umbc.edu>, R interface by Sigal Blay <sblay@sfu.ca>
Date of publication2012-11-24 08:11:17
MaintainerBrad McNeney <mcneney@stat.sfu.ca>
LicenseGPL (>= 2)
Version0.3
http://stat.sfu.ca/statgen/research/stepwise.html

View on CRAN

Files

MD5
R
R/print.pair.R R/phylpro.R R/maxchi.R R/summary.phylpro.R R/summary.maxchi.R
DESCRIPTION
NAMESPACE
src
src/init.c
src/getMaxChi.c
src/stepwise.c
src/getMaxChi.h
src/Rphylpro.c
src/getPhylpro.c
src/Rmaxchi.c
src/Phylpro.c
src/init.h
src/MaxChi.c
src/getPhylpro.h
data
data/stepwise.seqs.RData
demo
demo/00Index
demo/phylpro.R demo/maxchi.R
inst
inst/CITATION
inst/doc
inst/doc/docu.pdf
inst/extdata
inst/extdata/stepwise.seqs.R
inst/extdata/simulinfile.txt
man
man/summary.phylpro.Rd man/stepwise.seqs.Rd man/maxchi.Rd man/phylpro.Rd man/stepwise-internal.Rd man/summary.maxchi.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.