Summary of a maxchi object

Description

Print a summary of a maxchi object

Usage

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 ## S3 method for class 'maxchi'
summary(object, ...) 

Arguments

object

A list object of class maxchi output by the maxchi function

...

Additional arguments to the summary function (currently unused)

Details

The output of maxchi includes information on all site- and pair-specific chi-squares that exceed the 90th percentile of the permutation distribution. The summary.maxchi function computes maximum site-specific measures (i.e. maxima over all sequence-pair chi-squares from the same site) and reports all sequence pairs that tied for these maximum values.

Value

siteWinlocs

Window locations with significant recombination signal

siteChisqs

The maximum chi-square at these window locations

pairs

The pair(s) that give the maximum chi-square statistic at each window location

Author(s)

Brad McNeney <mcneney@stat.sfu.ca>, Jinko Graham <jgraham@stat.sfu.ca>, Sigal Blay <sblay@sfu.ca>

See Also

maxchi

Examples

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