summary.maxchi: Summary of a maxchi object

In stepwise: Stepwise detection of recombination breakpoints

Description

Print a summary of a maxchi object

Usage

 ## S3 method for class 'maxchi'
summary(object, ...) 

Arguments

object	A list object of class maxchi output by the maxchi function
...	Additional arguments to the summary function (currently unused)

Details

The output of maxchi includes information on all site- and pair-specific chi-squares that exceed the 90th percentile of the permutation distribution. The summary.maxchi function computes maximum site-specific measures (i.e. maxima over all sequence-pair chi-squares from the same site) and reports all sequence pairs that tied for these maximum values.

Value

siteWinlocs	Window locations with significant recombination signal
siteChisqs	The maximum chi-square at these window locations
pairs	The pair(s) that give the maximum chi-square statistic at each window location

Author(s)

Brad McNeney <[e-mail]>, Jinko Graham <[e-mail]>, Sigal Blay <[e-mail]>

See Also

maxchi

Examples

 demo(maxchi) 

stepwise documentation built on May 2, 2019, 8:20 a.m.