summary.phylpro: Summary of a phylpro object

In stepwise: Stepwise detection of recombination breakpoints

Description

Print a summary of a phylpro object

Usage

 ## S3 method for class 'phylpro'
summary(object, ...) 

Arguments

object	A list object of class phylpro output by the phylpro function
...	Additional arguments to the summary function (currently unused)

Details

The output of phylpro includes information on all site- and target sequence-specific correlations that exceed the 90th percentile of the permutation distribution. The summary.phylpro function computes minimum site-specific measures (i.e. minima over all target-sequence correlations from the same site) and reports all target sequences that tied for these minimum values.

Value

siteWinlocs	Window locations with significant recombination signal
siteCorrs	The minimum correlation at these window locations
target.seqs	The target sequence(s) that give the minimum correlation at each window location

Author(s)

Brad McNeney <[e-mail]>, Jinko Graham <[e-mail]>, Sigal Blay <[e-mail]>

See Also

phylpro

Examples

 demo(phylpro) 

stepwise documentation built on May 2, 2019, 8:20 a.m.