removeSpike: Remove Spikes

View source: R/removeSpike.r

removeSpikeR Documentation

Remove Spikes

Description

Remove spikes from data.

Usage

removeSpike(data, spike, invert = FALSE, debug = FALSE)

Arguments

data

data.frame with data to remove spikes from.

spike

data.frame with list of spikes.

invert

logical FALSE to remove spikes, TRUE to keep spikes.

debug

logical indicating printing debug information.

Details

Removes identified spikes from the dataset. Spikes are identified using the function calculateSpike and provided as a separate dataset. NB! Samples must have unique identifiers. Some laboratories use non-unique names for e.g. negative controls. To allow identification of specific samples when multiple batches are imported into one dataset an id is automatically created by combining the sample name and the file name. This work well as long as there is at most 1 identically named sample in each file (batch). To enable multiple identically named samples in one file, the sample names can be prefixed with the lane or well number before importing them to STR-validator.

Value

data.frame with spikes removed.


strvalidator documentation built on July 26, 2023, 5:45 p.m.